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Boudewijn F.H. Ten Hallers
Researcher at Children's Hospital Oakland Research Institute
Publications - 13
Citations - 1963
Boudewijn F.H. Ten Hallers is an academic researcher from Children's Hospital Oakland Research Institute. The author has contributed to research in topics: Genome & Hylobates. The author has an hindex of 12, co-authored 13 publications receiving 1780 citations. Previous affiliations of Boudewijn F.H. Ten Hallers include Children's Hospital Oakland.
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Journal ArticleDOI
The genome of the green anole lizard and a comparative analysis with birds and mammals
Jessica Alföldi,Federica Di Palma,Manfred Grabherr,Christina L. Williams,Lesheng Kong,Evan Mauceli,Pamela Russell,Craig B. Lowe,Richard E. Glor,Jacob D. Jaffe,David A. Ray,Stéphane Boissinot,Andrew M. Shedlock,Christopher W. Botka,Todd A. Castoe,John K. Colbourne,Matthew K. Fujita,Matthew K. Fujita,Ricardo Moreno,Boudewijn F.H. Ten Hallers,David Haussler,Andreas Heger,David I. Heiman,Daniel E. Janes,Jeremy A. Johnson,Pieter J. de Jong,Maxim Koriabine,Marcia Lara,Peter A. Novick,Chris L. Organ,Sally E. Peach,Steven Poe,David D. Pollock,Kevin de Queiroz,Thomas J. Sanger,Steve Searle,Jeremy Smith,Zachary Smith,Ross Swofford,Jason Turner-Maier,Juli Wade,Sarah Young,Amonida Zadissa,Scott V. Edwards,Travis C. Glenn,Christopher J. Schneider,Jonathan B. Losos,Eric S. Lander,Matthew Breen,Matthew Breen,Chris P. Ponting,Kerstin Lindblad-Toh,Kerstin Lindblad-Toh +52 more
TL;DR: Comparative gene analysis shows that amniote egg proteins have evolved significantly more rapidly than other proteins, and an anole phylogeny resolves basal branches to illuminate the history of their repeated adaptive radiations.
The genome of the green anole lizard and a comparative analysis with birds and mammals
Jessica Alföldi,Federica Di Palma,Manfred Grabherr,Christina L. Williams,Lesheng Kong,Evan Mauceli,Pamela Russell,Craig B. Lowe,Richard E. Glor,Jacob D. Jaffe,David A. Ray,Stéphane Boissinot,Andrew M. Shedlock,Christopher W. Botka,Todd A. Castoe,John K. Colbourne,Matthew K. Fujita,Matthew K. Fujita,Ricardo Moreno,Boudewijn F.H. Ten Hallers,David Haussler,Andreas Heger,David I. Heiman,Daniel E. Janes,Jeremy A. Johnson,Pieter J. de Jong,Maxim Koriabine,Marcia Lara,Peter A. Novick,Chris L. Organ,Sally E. Peach,Steven Poe,David D. Pollock,Kevin de Queiroz,Thomas J. Sanger,Steve Searle,Jeremy Smith,Zachary Smith,Ross Swofford,Jason Turner-Maier,Juli Wade,Sarah Young,Amonida Zadissa,Scott V. Edwards,Travis C. Glenn,Christopher J. Schneider,Jonathan B. Losos,Eric S. Lander,Matthew Breen,Matthew Breen,Chris P. Ponting,Kerstin Lindblad-Toh,Kerstin Lindblad-Toh +52 more
TL;DR: The evolution of the amniotic egg was one of the great evolutionary innovations in the history of life, freeing vertebrates from an obligatory connection to water and thus permitting the conquest of terrestrial environments as discussed by the authors.
Journal ArticleDOI
Gibbon genome and the fast karyotype evolution of small apes
Lucia Carbone,R. Alan Harris,Sante Gnerre,Krishna R. Veeramah,Krishna R. Veeramah,Belen Lorente-Galdos,John Huddleston,John Huddleston,Thomas J. Meyer,Javier Herrero,Christian Roos,Bronwen Aken,Fabio Anaclerio,Nicoletta Archidiacono,Carl Baker,Daniel Barrell,Mark A. Batzer,Kathryn Beal,Antoine Blancher,Craig L. Bohrson,Markus Brameier,Michael S. Campbell,Oronzo Capozzi,Claudio Casola,Giorgia Chiatante,Andrew Cree,Annette Damert,Pieter J. de Jong,Laura Dumas,Marcos Fernandez-Callejo,Paul Flicek,Nina V. Fuchs,Gut I,Gut M,Matthew W. Hahn,Jessica Hernandez-Rodriguez,LaDeana W. Hillier,Robert Hubley,Bianca Ianc,Zsuzsanna Izsvák,Nina G. Jablonski,Laurel Johnstone,Anis Karimpour-Fard,Miriam K. Konkel,Dennis Kostka,Nathan H. Lazar,Sandra L. Lee,Lora Lewis,Yue Liu,Devin P. Locke,Swapan Mallick,Fernando L. Mendez,Fernando L. Mendez,Matthieu Muffato,Lynne V. Nazareth,Kimberly A. Nevonen,Majesta O'Bleness,Cornelia Ochis,Duncan T. Odom,Katherine S. Pollard,Javier Quilez,David Reich,Mariano Rocchi,Gerald G. Schumann,Stephen M. J. Searle,James M. Sikela,Gabriella Skollar,Arian F.A. Smit,Kemal Sonmez,Boudewijn F.H. Ten Hallers,Elizabeth Terhune,Gregg W.C. Thomas,Brygg Ullmer,Mario Ventura,Jerilyn A. Walker,Jeffrey D. Wall,Lutz Walter,Michelle C Ward,Michelle C Ward,Sarah J. Wheelan,Christopher W. Whelan,Christopher W. Whelan,Simon D. M. White,Larry J. Wilhelm,August E. Woerner,Mark Yandell,Baoli Zhu,Michael F. Hammer,Tomas Marques-Bonet,Tomas Marques-Bonet,Evan E. Eichler,Evan E. Eichler,Lucinda Fulton,Catrina Fronick,Donna M. Muzny,Wesley C. Warren,Kim C. Worley,Jeffrey Rogers,Richard K. Wilson,Richard A. Gibbs +99 more
TL;DR: The assembly and analysis of a northern white-cheeked gibbon genome is presented and the propensity for a gibbon-specific retrotransposon (LAVA) to insert into chromosome segregation genes and alter transcription by providing a premature termination site is described, suggesting a possible molecular mechanism for the genome plasticity of the gibbon lineage.
Journal ArticleDOI
Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum.
Robert VanBuren,Doug Bryant,Patrick P. Edger,Patrick P. Edger,Haibao Tang,Haibao Tang,Diane Burgess,Dinakar Challabathula,Kristi E. Spittle,Richard Hall,Jenny Gu,Eric Lyons,Michael Freeling,Dorothea Bartels,Boudewijn F.H. Ten Hallers,Alex Hastie,Todd P. Michael,Todd C. Mockler +17 more
TL;DR: The Oropetium genome demonstrates the utility of single-molecule real-time sequencing for assembling high-quality plant and other eukaryotic genomes, and serves as a valuable resource for the plant comparative genomics community.
Journal ArticleDOI
Comprehensive definition of genome features in Spirodela polyrhiza by high-depth physical mapping and short-read DNA sequencing strategies.
Todd P. Michael,Douglas W. Bryant,Ryan Gutierrez,Nikolai Borisjuk,Philomena Chu,Hanzhong Zhang,Jing Xia,Jing Xia,Junfei Zhou,Hai Peng,Moaine El Baidouri,Boudewijn F.H. Ten Hallers,Alex Hastie,Tiffany Y. Liang,Kenneth Acosta,Sarah Gilbert,Connor McEntee,Scott A. Jackson,Todd C. Mockler,Weixiong Zhang,Weixiong Zhang,Eric Lam +21 more
TL;DR: High‐throughput sequencing and genome mapping technologies are combined to generate a validated sequence map of the 20 Spirodela polyrhiza chromosomes and reveal a genome that has undergone reduction, likely through eliminating non‐essential protein coding genes, rDNA and LTRs.