H
Hui Yin Chang
Researcher at University of Michigan
Publications - 20
Citations - 1275
Hui Yin Chang is an academic researcher from University of Michigan. The author has contributed to research in topics: Medicine & Biology. The author has an hindex of 11, co-authored 15 publications receiving 523 citations. Previous affiliations of Hui Yin Chang include Academia Sinica & National Cheng Kung University.
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Journal ArticleDOI
Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.
David J. Clark,Saravana M. Dhanasekaran,Francesca Petralia,Jianbo Pan,Xiaoyu Song,Yingwei Hu,Felipe da Veiga Leprevost,Boris Reva,Tung-Shing M. Lih,Hui Yin Chang,Weiping Ma,Chen Huang,Christopher J. Ricketts,Lijun Chen,Azra Krek,Yize Li,Dmitry Rykunov,Qing Kay Li,Lin Chen,Umut Ozbek,Suhas Vasaikar,Yige Wu,Seungyeul Yoo,Shrabanti Chowdhury,Matthew A. Wyczalkowski,Jiayi Ji,Michael Schnaubelt,Andy T. Kong,Sunantha Sethuraman,Dmitry M. Avtonomov,Minghui Ao,Antonio Colaprico,Song Cao,Kyung-Cho Cho,Selim Kalayci,Shiyong Ma,Wenke Liu,Kelly V. Ruggles,Anna Calinawan,Zeynep H. Gümüş,Daniel J. Geiszler,Emily Kawaler,Guo Ci Teo,Bo Wen,Yuping Zhang,Sarah Keegan,Kai Li,Feng Chen,Nathan Edwards,Phillip M. Pierorazio,Xi Steven Chen,Christian P. Pavlovich,A. Ari Hakimi,Gabriel Bromiński,James J. Hsieh,Andrzej Antczak,Tatiana Omelchenko,Jan Lubinski,Maciej Wiznerowicz,Maciej Wiznerowicz,W. Marston Linehan,Christopher R. Kinsinger,Mathangi Thiagarajan,Emily S. Boja,Mehdi Mesri,Tara Hiltke,Ana I. Robles,Henry Rodriguez,Jiang Qian,David Fenyö,Bing Zhang,Li Ding,Eric E. Schadt,Arul M. Chinnaiyan,Zhen Zhang,Gilbert S. Omenn,Marcin Cieslik,Daniel W. Chan,Alexey I. Nesvizhskii,Pei Wang,Hui Zhang,Abdul Samad Hashimi,Alexander R. Pico,Alla Y. Karpova,Alyssa Charamut,Amanda G. Paulovich,Amy M. Perou,Anna Malovannaya,Annette Marrero-Oliveras,Anupriya Agarwal,Barbara Hindenach,Barbara Pruetz,Beom-Jun Kim,Brian J. Druker,Chelsea J. Newton,Chet Birger,Corbin D. Jones,Cristina E. Tognon,D. R. Mani,Dana R. Valley,Daniel C. Rohrer,Daniel C. Zhou,Darlene Tansil,David Chesla,David I. Heiman,David C. Wheeler,Donghui Tan,Doug W. Chan,Emek Demir,Ewa P. Malc,Francesmary Modugno,Gaddy Getz,Galen Hostetter,George D. Wilson,Gerald W. Hart,Heng Zhu,Hongwei Liu,Houston Culpepper,Hua Sun,Hua Zhou,Jacob J. Day,James Suh,Jasmine Huang,Jason E. McDermott,Jeffrey R. Whiteaker,Jeffrey W. Tyner,Jennifer M. Eschbacher,Jin Chen,John McGee,Jun Zhu,Karen A. Ketchum,Karin D. Rodland,Karl R. Clauser,Karna Robinson,Karsten Krug,Katherine A. Hoadley,Ki Sung Um,Kim Elburn,Kimberly R. Holloway,Liang-Bo Wang,Lili Blumenberg,Linda Hannick,Liqun Qi,Lori J. Sokoll,MacIntosh Cornwell,Marc M. Loriaux,Marcin J. Domagalski,Marina A. Gritsenko,Matthew L. Anderson,Matthew E. Monroe,Matthew J. Ellis,Maureen Dyer,Meenakshi Anurag,Meghan C. Burke,Melissa Borucki,Michael A. Gillette,Michael J. Birrer,Michael T. Lewis,Michael Ittmann,Michael Smith,Michael Vernon,Michelle Chaikin,Milan G. Chheda,Munziba Khan,Nancy Roche,Nathan Edwards,Negin Vatanian,Nicole Tignor,Noam D. Beckmann,Pamela Grady,Patricia Castro,Paul D. Piehowski,Peter B. McGarvey,Piotr A. Mieczkowski,Pushpa Hariharan,Qingsong Gao,Rajiv Dhir,Ramani B. Kothadia,Ratna R. Thangudu,Rebecca I. Montgomery,Reyka G Jayasinghe,Richard D. Smith,Robert Edwards,Robert Zelt,Ross Bremner,Ruiyang Liu,Runyu Hong,Sailaja Mareedu,Samuel H. Payne,Sandra Cottingham,Sanford P. Markey,Scott D. Jewell,Shalin Patel,Shankha Satpathy,Shannon Richey,Sherri R. Davies,Shuang Cai,Simina M. Boca,Snehal Patil,Sohini Sengupta,Sonya Carter,Stacey Gabriel,Stefani N. Thomas,Stephanie De Young,Stephen E. Stein,Steven A. Carr,Steven M. Foltz,Sue Hilsenbeck,Tanya Krubit,Tao Liu,Tara Skelly,Thomas F. Westbrook,Uma Borate,Uma Velvulou,Vladislav A. Petyuk,William Bocik,Xi Chen,Yan Shi,Yifat Geffen,Yihao Lu,Ying Wang,Yosef E. Maruvka,Zhi Li,Zhiao Shi,Zhidong Tu +224 more
TL;DR: A large-scale proteogenomic analysis of ccRCC is reported to discern the functional impact of genomic alterations and provides evidence for rational treatment selection stemming fromccRCC pathobiology.
Journal ArticleDOI
Proteogenomic Characterization of Endometrial Carcinoma.
Yongchao Dou,Emily Kawaler,Daniel Cui Zhou,Marina A. Gritsenko,Chen Huang,Lili Blumenberg,Alla Karpova,Vladislav A. Petyuk,Sara R. Savage,Shankha Satpathy,Wenke Liu,Yige Wu,Chia-Feng Tsai,Bo Wen,Zhi Li,Song Cao,Jamie Moon,Zhiao Shi,MacIntosh Cornwell,Matthew A. Wyczalkowski,Rosalie K. Chu,Suhas Vasaikar,Hua Zhou,Qingsong Gao,Ronald J. Moore,Kai Li,Sunantha Sethuraman,Matthew E. Monroe,Rui Zhao,David I. Heiman,Karsten Krug,Karl R. Clauser,Ramani Kothadia,Yosef E. Maruvka,Alexander R. Pico,Amanda E. Oliphant,Emily L. Hoskins,Samuel L. Pugh,Sean J.I. Beecroft,David W Adams,Jonathan C. Jarman,Andy T. Kong,Hui Yin Chang,Boris Reva,Yuxing Liao,Dmitry Rykunov,Antonio Colaprico,Xi Steven Chen,Andrzej Czekański,Marcin Jędryka,Rafal Matkowski,Maciej Wiznerowicz,Maciej Wiznerowicz,Tara Hiltke,Emily S. Boja,Christopher R. Kinsinger,Mehdi Mesri,Ana I. Robles,Henry Rodriguez,David G. Mutch,Katherine Fuh,Matthew J. Ellis,Deborah DeLair,Mathangi Thiagarajan,D. R. Mani,Gad Getz,Michael S. Noble,Alexey I. Nesvizhskii,Pei Wang,Matthew L. Anderson,Douglas A. Levine,Richard D. Smith,Samuel H. Payne,Kelly V. Ruggles,Karin D. Rodland,Karin D. Rodland,Li Ding,Bing Zhang,Tao Liu,David Fenyö,Anupriya Agarwal,Meenakshi Anurag,Dmitry M. Avtonomov,Chet Birger,Michael J. Birrer,Simina M. Boca,William Bocik,Uma Borate,Melissa Borucki,Meghan C. Burke,Shuang Cai,Anna Calinawan,Steven A. Carr,Sonya Carter,Patricia Castro,Sandra Cerda,Michelle Chaikin,Daniel W. Chan,Doug W. Chan,Alyssa Charamut,Feng Chen,Jin Chen,Lijun Chen,Lin Chen,David Chesla,Milan G. Chheda,Arul M. Chinnaiyan,Shrabanti Chowdhury,Marcin Cieslik,David J. Clark,Sandra Cottingham,Houston Culpepper,Jacob J. Day,Stephanie De Young,Emek Demir,Saravana M. Dhanasekaran,Rajiv Dhir,Marcin J. Domagalski,Peter Dottino,Brian J. Druker,Elizabeth R. Duffy,Maureen Dyer,Nathan Edwards,Robert Edwards,Kim Elburn,Jayson B. Field,Alicia Francis,Stacey Gabriel,Yifat Geffen,Daniel J. Geiszler,Michael A. Gillette,Andrew K. Godwin,Pamela Grady,Linda Hannick,Pushpa Hariharan,Sue Hilsenbeck,Barbara Hindenach,Katherine A. Hoadley,Runyu Hong,Galen Hostetter,James J. Hsieh,Yingwei Hu,Michael Ittmann,Eric J. Jaehnig,Scott D. Jewell,Jiayi Ji,Corbin D. Jones,Renee Karabon,Karen A. Ketchum,Munziba Khan,Beom-Jun Kim,Azra Krek,Tanya Krubit,Chandan Kumar-Sinha,Felipe D. Leprevost,Michael T. Lewis,Qing Kay Li,Yize Li,Hongwei Liu,Jan Lubinski,Weiping Ma,Rashna Madan,Ewa P. Malc,Anna Malovannaya,Sailaja Mareedu,Sanford P. Markey,Annette Marrero-Oliveras,John A. Martignetti,Jason E. McDermott,Peter B. McGarvey,John McGee,Piotr A. Mieczkowski,Francesmary Modugno,Rebecca I. Montgomery,Chelsea J. Newton,Gilbert S. Omenn,Amanda G. Paulovich,Amy M. Perou,Francesca Petralia,Paul D. Piehowski,Larisa Polonskaya,Liqun Qi,Shannon Richey,Karna Robinson,Nancy Roche,Daniel C. Rohrer,Eric E. Schadt,Michael Schnaubelt,Yan Shi,Tara Skelly,Lori J. Sokoll,Xiaoyu Song,Stephen E. Stein,James Suh,Donghui Tan,Darlene Tansil,Guo Ci Teo,Ratna R. Thangudu,Cristina E. Tognon,Elie Traer,Jeffrey W. Tyner,Ki Sung Um,Dana R. Valley,Negin Vatanian,Pankaj Vats,Uma Velvulou,Michael Vernon,Liang-Bo Wang,Ying Wang,Alex Webster,Thomas F. Westbrook,David C. Wheeler,Jeffrey R. Whiteaker,George D. Wilson,Yuriy Zakhartsev,Robert Zelt,Hui Zhang,Yuping Zhang,Zhen Zhang,Grace Zhao +219 more
TL;DR: A comprehensive proteogenomic characterization of endometrial carcinomas revealed possible new consequences of perturbations to the p53 and Wnt/β-catenin pathways, identified a potential role for circRNAs in the epithelial-mesenchymal transition, and provided new information about proteomic markers of clinical and genomic tumor subgroups, including relationships to known druggable pathways.
Journal ArticleDOI
Philosopher: a versatile toolkit for shotgun proteomics data analysis.
Felipe da Veiga Leprevost,Sarah E. Haynes,Dmitry M. Avtonomov,Hui Yin Chang,Avinash Kumar Shanmugam,Dattatreya Mellacheruvu,Andy T. Kong,Alexey I. Nesvizhskii +7 more
TL;DR: The Philosopher toolkit integrates high-performance algorithms and existing tools and is a dependency-free, fast and comprehensive proteomics pipeline, able to rapidly process even the most complex proteomics datasets with efficient resource management.
Journal ArticleDOI
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma
Chen Huang,Lijun Chen,Sara R. Savage,Rodrigo Vargas Eguez,Yongchao Dou,Yize Li,Felipe da Veiga Leprevost,Eric J. Jaehnig,Jonathan T. Lei,Bo Wen,Michael Schnaubelt,Karsten Krug,Xiaoyu Song,Marcin Cieślik,Hui Yin Chang,Matthew A. Wyczalkowski,Kai Li,Antonio Colaprico,Qing Kay Li,David J. Clark,Yingwei Hu,Liwei Cao,Jianbo Pan,Yuefan Wang,Kyung-Cho Cho,Zhiao Shi,Yuxing Liao,Wen Jiang,Meenakshi Anurag,Jiayi Ji,Seungyeul Yoo,Daniel Cui Zhou,Wen-Wei Liang,Michael C. Wendl,Pankaj Vats,Steven A. Carr,D. R. Mani,Zhen Zhang,Jiang Qian,Xi Chen,Alexander R. Pico,Pei Wang,Arul M. Chinnaiyan,Karen A. Ketchum,Christopher R. Kinsinger,Ana I. Robles,Eunkyung An,Tara Hiltke,Mehdi Mesri,Mathangi Thiagarajan,Alissa M. Weaver,Andrew G. Sikora,Jan Lubinski,Jan Lubinski,Małgorzata Wierzbicka,Małgorzata Wierzbicka,Maciej Wiznerowicz,Maciej Wiznerowicz,Shankha Satpathy,Michael A. Gillette,Michael A. Gillette,George Miles,Matthew J. Ellis,Gilbert S. Omenn,Henry Rodriguez,Emily S. Boja,Saravana M. Dhanasekaran,Li Ding,Alexey I. Nesvizhskii,Adel K. El-Naggar,Daniel W. Chan,Hui Zhang,Bing Zhang,Anupriya Agarwal,Matthew L. Anderson,Shayan C. Avanessian,Dmitry M. Avtonomov,Oliver F. Bathe,Chet Birger,Michael J. Birrer,Lili Blumenberg,William Bocik,Uma Borate,Melissa Borucki,Meghan C. Burke,Shuang Cai,Anna Calinawan,Sandra Cerda,Alyssa Charamut,Lin S. Chen,Shrabanti Chowdhury,Karl R. Clauser,Houston Culpepper,Tomasz Czernicki,Fulvio D'Angelo,Jacob J. Day,Stephanie De Young,Emek Demir,Fei Ding,Marcin J. Domagalski,Joseph C. Dort,Brian J. Druker,Elizabeth R. Duffy,Maureen Dyer,Nathan Edwards,Kimberly Elburn,Tatiana S. Ermakova,David Fenyö,Renata Ferrarotto,Alicia Francis,Stacey Gabriel,Luciano Garofano,Yifat Geffen,Gad Getz,Charles A. Goldthwaite,Linda Hannick,Pushpa Hariharan,David N. Hayes,David I. Heiman,Barbara Hindenach,Katherine A. Hoadley,Galen Hostetter,Martin Hyrcza,Scott D. Jewell,Corbin D. Jones,M. Harry Kane,Alicia Karz,Ramani B. Kothadia,Azra Krek,Chandan Kumar-Sinha,Tao Liu,Hongwei Liu,Weiping Ma,Ewa P. Malc,Anna Malovannaya,Sailaja Mareedu,Sanford P. Markey,Annette Marrero-Oliveras,Nicollette Maunganidze,Jason E. McDermott,Peter B. McGarvey,John McGee,Piotr A. Mieczkowski,Simona Migliozzi,Rebecca I. Montgomery,Chelsea J. Newton,Umut Ozbek,Amanda G. Paulovich,Samuel H. Payne,Dimitar Dimitrov Pazardzhikliev,Amy M. Perou,Francesca Petralia,Lyudmila Petrenko,Paul D. Piehowski,Dmitris Placantonakis,Larisa Polonskaya,Elena V. Ponomareva,Olga Potapova,Liqun Qi,Ning Qu,Shakti Ramkissoon,Boris Reva,Shannon Richey,Karna Robinson,Nancy Roche,Karin D. Rodland,Daniel C. Rohrer,Dmitry Rykunov,Eric E. Schadt,Yan Shi,Yvonne Shutack,Shilpi Singh,Tara Skelly,Richard D. Smith,Lori J. Sokoll,Jakub Stawicki,Stephen E. Stein,James Suh,Wojciech Szopa,Dave Tabor,Donghui Tan,Darlene Tansil,Guo Ci Teo,Ratna R. Thangudu,Cristina E. Tognon,Elie Traer,Shirley Tsang,Jeffrey W. Tyner,Ki Sung Um,Dana R. Valley,Lyubomir Valkov Vasilev,Negin Vatanian,Uma Velvulou,Michael Vernon,Thomas F. Westbrook,Jeffrey R. Whiteaker,Yige Wu,Midie Xu,Lijun Yao,Xinpei Yi,Fengchao Yu,Kakhaber Zaalishvili,Yuriy Zakhartsev,Robert Zelt,Grace Zhao,Jun Zhu +205 more
TL;DR: In this paper, a proteogenomic study of 108 human papilloma virus (HPV)-negative head and neck squamous cell carcinomas (HNSCCs) is presented.
Journal ArticleDOI
Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer
Francesca Petralia,Nicole Tignor,Boris Reva,Mateusz Koptyra,Shrabanti Chowdhury,Dmitry Rykunov,Azra Krek,Weiping Ma,Yuankun Zhu,Jiayi Ji,Anna Calinawan,Jeffrey R. Whiteaker,Antonio Colaprico,Vasileios Stathias,Tatiana Omelchenko,Xiaoyu Song,Pichai Raman,Yiran Guo,Miguel A. Brown,Richard G. Ivey,John Szpyt,Sanjukta Guha Thakurta,Marina A. Gritsenko,Karl K. Weitz,Gonzalo Lopez,Selim Kalayci,Zeynep H. Gümüş,Seungyeul Yoo,Felipe da Veiga Leprevost,Hui Yin Chang,Karsten Krug,Lizabeth Katsnelson,Ying Wang,Jacob J. Kennedy,Uliana J. Voytovich,Lei Zhao,Krutika S. Gaonkar,Brian Ennis,Bo Zhang,Valerie Baubet,Lamiya Tauhid,Jena Lilly,Jennifer Mason,Bailey Farrow,Nathan Young,Sarah Leary,Sarah Leary,Sarah Leary,Jamie Moon,Vladislav A. Petyuk,Javad Nazarian,Javad Nazarian,Nithin D. Adappa,James N. Palmer,Robert Lober,Samuel Rivero-Hinojosa,Liang-Bo Wang,Joshua M. Wang,Matilda Broberg,Rosalie K. Chu,Ronald J. Moore,Matthew E. Monroe,Rui Zhao,Richard D. Smith,Jun Zhu,Ana I. Robles,Mehdi Mesri,Emily S. Boja,Tara Hiltke,Henry Rodriguez,Bing Zhang,Eric E. Schadt,D. R. Mani,Li Ding,Antonio Iavarone,Maciej Wiznerowicz,Maciej Wiznerowicz,Stephan C. Schürer,Xi Chen,Allison Heath,Jo Lynne Rokita,Alexey I. Nesvizhskii,David Fenyö,Karin D. Rodland,Karin D. Rodland,Tao Liu,Steven P. Gygi,Amanda G. Paulovich,Adam C. Resnick,Phillip B. Storm,Brian R. Rood,Pei Wang,Alicia Francis,Allison M. Morgan,Angela Waanders,Angela N. Viaene,Anna Maria Buccoliero,Arul M. Chinnaiyan,Carina A. Leonard,Cassie Kline,Chiara Caporalini,Christopher R. Kinsinger,Chunde Li,David E. Kram,Derek Hanson,Elizabeth Appert,Emily Kawaler,Eric H. Raabe,Eric M. Jackson,Jeffrey P. Greenfield,Gabrielle S. Stone,Gad Getz,Gerald A. Grant,Guo Ci Teo,Ian F. Pollack,Jason E. Cain,Jessica B. Foster,Joanna J. Phillips,July E. Palma,Karen A. Ketchum,Kelly V. Ruggles,Lili Blumenberg,MacIntosh Cornwell,Mahdi Sarmady,Marcin J. Domagalski,Marcin Cieślik,Mariarita Santi,Marilyn M. Li,Matthew J. Ellis,Matthew A. Wyczalkowski,Meghan Connors,Mirko Scagnet,Nalin Gupta,Nathan Edwards,Nicholas A Vitanza,Olena Morozova Vaske,Oren J. Becher,Peter B. McGarvey,Ron Firestein,Sabine Mueller,Samuel G. Winebrake,Saravana M. Dhanasekaran,Shuang Cai,Sonia Partap,Tatiana Patton,Toan Le,Travis D. Lorentzen,Wenke Liu,William Bocik +148 more
TL;DR: This is the first large-scale proteogenomics analysis across traditional histological boundaries to uncover foundational pediatric brain tumor biology and inform rational treatment selection.