S
Selim Kalayci
Researcher at Icahn School of Medicine at Mount Sinai
Publications - 13
Citations - 1274
Selim Kalayci is an academic researcher from Icahn School of Medicine at Mount Sinai. The author has contributed to research in topics: Proteogenomics & Genome-wide association study. The author has an hindex of 6, co-authored 13 publications receiving 694 citations.
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Journal ArticleDOI
Comprehensive functional genomic resource and integrative model for the human brain
Daifeng Wang,Daifeng Wang,Shuang Liu,Jonathan Warrell,Hyejung Won,Xu Shi,Fabio C. P. Navarro,Declan Clarke,Mengting Gu,Prashant Emani,Yucheng T. Yang,Min Xu,Michael J. Gandal,Shaoke Lou,Jing Zhang,Jonathan J. Park,Chengfei Yan,Suhn K. Rhie,Kasidet Manakongtreecheep,Holly Zhou,Aparna Nathan,Mette A. Peters,Eugenio Mattei,Dominic Fitzgerald,Tonya M. Brunetti,Jill Moore,Yan Jiang,Kiran Girdhar,Gabriel E. Hoffman,Selim Kalayci,Zeynep H. Gümüş,Gregory E. Crawford,Panos Roussos,Schahram Akbarian,Andrew E. Jaffe,Kevin P. White,Zhiping Weng,Nenad Sestan,Daniel H. Geschwind,James A. Knowles,Mark Gerstein +40 more
TL;DR: The resource and integrative analyses have uncovered genomic elements and networks in the brain, which in turn have provided insight into the molecular mechanisms underlying psychiatric disorders.
Journal ArticleDOI
Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.
David J. Clark,Saravana M. Dhanasekaran,Francesca Petralia,Jianbo Pan,Xiaoyu Song,Yingwei Hu,Felipe da Veiga Leprevost,Boris Reva,Tung-Shing M. Lih,Hui Yin Chang,Weiping Ma,Chen Huang,Christopher J. Ricketts,Lijun Chen,Azra Krek,Yize Li,Dmitry Rykunov,Qing Kay Li,Lin Chen,Umut Ozbek,Suhas Vasaikar,Yige Wu,Seungyeul Yoo,Shrabanti Chowdhury,Matthew A. Wyczalkowski,Jiayi Ji,Michael Schnaubelt,Andy T. Kong,Sunantha Sethuraman,Dmitry M. Avtonomov,Minghui Ao,Antonio Colaprico,Song Cao,Kyung-Cho Cho,Selim Kalayci,Shiyong Ma,Wenke Liu,Kelly V. Ruggles,Anna Calinawan,Zeynep H. Gümüş,Daniel J. Geiszler,Emily Kawaler,Guo Ci Teo,Bo Wen,Yuping Zhang,Sarah Keegan,Kai Li,Feng Chen,Nathan Edwards,Phillip M. Pierorazio,Xi Steven Chen,Christian P. Pavlovich,A. Ari Hakimi,Gabriel Bromiński,James J. Hsieh,Andrzej Antczak,Tatiana Omelchenko,Jan Lubinski,Maciej Wiznerowicz,Maciej Wiznerowicz,W. Marston Linehan,Christopher R. Kinsinger,Mathangi Thiagarajan,Emily S. Boja,Mehdi Mesri,Tara Hiltke,Ana I. Robles,Henry Rodriguez,Jiang Qian,David Fenyö,Bing Zhang,Li Ding,Eric E. Schadt,Arul M. Chinnaiyan,Zhen Zhang,Gilbert S. Omenn,Marcin Cieslik,Daniel W. Chan,Alexey I. Nesvizhskii,Pei Wang,Hui Zhang,Abdul Samad Hashimi,Alexander R. Pico,Alla Y. Karpova,Alyssa Charamut,Amanda G. Paulovich,Amy M. Perou,Anna Malovannaya,Annette Marrero-Oliveras,Anupriya Agarwal,Barbara Hindenach,Barbara Pruetz,Beom-Jun Kim,Brian J. Druker,Chelsea J. Newton,Chet Birger,Corbin D. Jones,Cristina E. Tognon,D. R. Mani,Dana R. Valley,Daniel C. Rohrer,Daniel C. Zhou,Darlene Tansil,David Chesla,David I. Heiman,David C. Wheeler,Donghui Tan,Doug W. Chan,Emek Demir,Ewa P. Malc,Francesmary Modugno,Gaddy Getz,Galen Hostetter,George D. Wilson,Gerald W. Hart,Heng Zhu,Hongwei Liu,Houston Culpepper,Hua Sun,Hua Zhou,Jacob J. Day,James Suh,Jasmine Huang,Jason E. McDermott,Jeffrey R. Whiteaker,Jeffrey W. Tyner,Jennifer M. Eschbacher,Jin Chen,John McGee,Jun Zhu,Karen A. Ketchum,Karin D. Rodland,Karl R. Clauser,Karna Robinson,Karsten Krug,Katherine A. Hoadley,Ki Sung Um,Kim Elburn,Kimberly R. Holloway,Liang-Bo Wang,Lili Blumenberg,Linda Hannick,Liqun Qi,Lori J. Sokoll,MacIntosh Cornwell,Marc M. Loriaux,Marcin J. Domagalski,Marina A. Gritsenko,Matthew L. Anderson,Matthew E. Monroe,Matthew J. Ellis,Maureen Dyer,Meenakshi Anurag,Meghan C. Burke,Melissa Borucki,Michael A. Gillette,Michael J. Birrer,Michael T. Lewis,Michael Ittmann,Michael Smith,Michael Vernon,Michelle Chaikin,Milan G. Chheda,Munziba Khan,Nancy Roche,Nathan Edwards,Negin Vatanian,Nicole Tignor,Noam D. Beckmann,Pamela Grady,Patricia Castro,Paul D. Piehowski,Peter B. McGarvey,Piotr A. Mieczkowski,Pushpa Hariharan,Qingsong Gao,Rajiv Dhir,Ramani B. Kothadia,Ratna R. Thangudu,Rebecca I. Montgomery,Reyka G Jayasinghe,Richard D. Smith,Robert Edwards,Robert Zelt,Ross Bremner,Ruiyang Liu,Runyu Hong,Sailaja Mareedu,Samuel H. Payne,Sandra Cottingham,Sanford P. Markey,Scott D. Jewell,Shalin Patel,Shankha Satpathy,Shannon Richey,Sherri R. Davies,Shuang Cai,Simina M. Boca,Snehal Patil,Sohini Sengupta,Sonya Carter,Stacey Gabriel,Stefani N. Thomas,Stephanie De Young,Stephen E. Stein,Steven A. Carr,Steven M. Foltz,Sue Hilsenbeck,Tanya Krubit,Tao Liu,Tara Skelly,Thomas F. Westbrook,Uma Borate,Uma Velvulou,Vladislav A. Petyuk,William Bocik,Xi Chen,Yan Shi,Yifat Geffen,Yihao Lu,Ying Wang,Yosef E. Maruvka,Zhi Li,Zhiao Shi,Zhidong Tu +224 more
TL;DR: A large-scale proteogenomic analysis of ccRCC is reported to discern the functional impact of genomic alterations and provides evidence for rational treatment selection stemming fromccRCC pathobiology.
Journal ArticleDOI
Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer
Francesca Petralia,Nicole Tignor,Boris Reva,Mateusz Koptyra,Shrabanti Chowdhury,Dmitry Rykunov,Azra Krek,Weiping Ma,Yuankun Zhu,Jiayi Ji,Anna Calinawan,Jeffrey R. Whiteaker,Antonio Colaprico,Vasileios Stathias,Tatiana Omelchenko,Xiaoyu Song,Pichai Raman,Yiran Guo,Miguel A. Brown,Richard G. Ivey,John Szpyt,Sanjukta Guha Thakurta,Marina A. Gritsenko,Karl K. Weitz,Gonzalo Lopez,Selim Kalayci,Zeynep H. Gümüş,Seungyeul Yoo,Felipe da Veiga Leprevost,Hui Yin Chang,Karsten Krug,Lizabeth Katsnelson,Ying Wang,Jacob J. Kennedy,Uliana J. Voytovich,Lei Zhao,Krutika S. Gaonkar,Brian Ennis,Bo Zhang,Valerie Baubet,Lamiya Tauhid,Jena Lilly,Jennifer Mason,Bailey Farrow,Nathan Young,Sarah Leary,Sarah Leary,Sarah Leary,Jamie Moon,Vladislav A. Petyuk,Javad Nazarian,Javad Nazarian,Nithin D. Adappa,James N. Palmer,Robert Lober,Samuel Rivero-Hinojosa,Liang-Bo Wang,Joshua M. Wang,Matilda Broberg,Rosalie K. Chu,Ronald J. Moore,Matthew E. Monroe,Rui Zhao,Richard D. Smith,Jun Zhu,Ana I. Robles,Mehdi Mesri,Emily S. Boja,Tara Hiltke,Henry Rodriguez,Bing Zhang,Eric E. Schadt,D. R. Mani,Li Ding,Antonio Iavarone,Maciej Wiznerowicz,Maciej Wiznerowicz,Stephan C. Schürer,Xi Chen,Allison Heath,Jo Lynne Rokita,Alexey I. Nesvizhskii,David Fenyö,Karin D. Rodland,Karin D. Rodland,Tao Liu,Steven P. Gygi,Amanda G. Paulovich,Adam C. Resnick,Phillip B. Storm,Brian R. Rood,Pei Wang,Alicia Francis,Allison M. Morgan,Angela Waanders,Angela N. Viaene,Anna Maria Buccoliero,Arul M. Chinnaiyan,Carina A. Leonard,Cassie Kline,Chiara Caporalini,Christopher R. Kinsinger,Chunde Li,David E. Kram,Derek Hanson,Elizabeth Appert,Emily Kawaler,Eric H. Raabe,Eric M. Jackson,Jeffrey P. Greenfield,Gabrielle S. Stone,Gad Getz,Gerald A. Grant,Guo Ci Teo,Ian F. Pollack,Jason E. Cain,Jessica B. Foster,Joanna J. Phillips,July E. Palma,Karen A. Ketchum,Kelly V. Ruggles,Lili Blumenberg,MacIntosh Cornwell,Mahdi Sarmady,Marcin J. Domagalski,Marcin Cieślik,Mariarita Santi,Marilyn M. Li,Matthew J. Ellis,Matthew A. Wyczalkowski,Meghan Connors,Mirko Scagnet,Nalin Gupta,Nathan Edwards,Nicholas A Vitanza,Olena Morozova Vaske,Oren J. Becher,Peter B. McGarvey,Ron Firestein,Sabine Mueller,Samuel G. Winebrake,Saravana M. Dhanasekaran,Shuang Cai,Sonia Partap,Tatiana Patton,Toan Le,Travis D. Lorentzen,Wenke Liu,William Bocik +148 more
TL;DR: This is the first large-scale proteogenomics analysis across traditional histological boundaries to uncover foundational pediatric brain tumor biology and inform rational treatment selection.
Journal ArticleDOI
Comprehensive Immunoprofiling of Pediatric Zika Reveals Key Role for Monocytes in the Acute Phase and No Effect of Prior Dengue Virus Infection.
Daniela Michlmayr,Eun Young Kim,Adeeb Rahman,Rohit Raghunathan,Seunghee Kim-Schulze,Yan Che,Selim Kalayci,Zeynep H. Gümüş,Guillermina Kuan,Angel Balmaseda,Andrew Kasarskis,Steven M. Wolinsky,Mayte Suárez-Fariñas,Eva Harris +13 more
TL;DR: Interestingly, pre-existing dengue immunity has minimal impact on the innate immune response to Zika, and this comprehensive immune profiling and network analysis of ZIKV infection in children serves as a valuable resource.
Journal ArticleDOI
iCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D.
TL;DR: Overall, iCAVE is the first freely available open source tool that enables 3D (optionally stereoscopic or immersive) visualizations of complex, dense, or multi-layered biomolecular networks.