J
Jonathan Z. Kaye
Researcher at Gordon and Betty Moore Foundation
Publications - 5
Citations - 361
Jonathan Z. Kaye is an academic researcher from Gordon and Betty Moore Foundation. The author has contributed to research in topics: Microbiome & Evolutionary ecology. The author has an hindex of 4, co-authored 5 publications receiving 224 citations.
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Journal ArticleDOI
Probing the evolution, ecology and physiology of marine protists using transcriptomics
David A. Caron,Harriet Alexander,Andrew E. Allen,Andrew E. Allen,John M. Archibald,John M. Archibald,E. Virginia Armbrust,Charles Bachy,Callum J. Bell,Arvind K. Bharti,Sonya T. Dyhrman,Stephanie Guida,Karla B. Heidelberg,Jonathan Z. Kaye,Julia Metzner,Sarah R. Smith,Alexandra Z. Worden,Alexandra Z. Worden +17 more
TL;DR: This Review summarizes recent developments in the understanding of the ecology, physiology and evolution of protists, derived from transcriptomic studies of cultured strains and natural communities, and discusses how these novel large-scale genetic datasets will be used in the future.
Journal ArticleDOI
Genetic tool development in marine protists: emerging model organisms for experimental cell biology
Drahomíra Faktorová,R. Ellen R. Nisbet,R. Ellen R. Nisbet,José A. Fernández Robledo,Elena Casacuberta,Lisa Sudek,Andrew E. Allen,Manuel Ares,Cristina Aresté,Cecilia Balestreri,Adrian C. Barbrook,Patrick Beardslee,Sara J. Bender,David S. Booth,François-Yves Bouget,Chris Bowler,Susana A. Breglia,Colin Brownlee,Gertraud Burger,Heriberto Cerutti,Rachele Cesaroni,Miguel Angel Chiurillo,Thomas E. Clemente,Duncan B. Coles,Jackie L. Collier,Elizabeth C. Cooney,Kathryn J. Coyne,Roberto Docampo,Christopher L. Dupont,Virginia P. Edgcomb,Elin Einarsson,Pia A. Elustondo,Fernán Federici,Verónica Freire-Benéitez,Nastasia J. Freyria,Kodai Fukuda,Paulo A. Garcia,Peter R. Girguis,Fatma Gomaa,Sebastian G. Gornik,Jian Guo,Jian Guo,Vladimír Hampl,Yutaka Hanawa,Esteban R. Haro-Contreras,Elisabeth Hehenberger,Andrea Highfield,Yoshihisa Hirakawa,Amanda Hopes,Christopher J. Howe,Ian Hu,Jorge Ibañez,Nicholas A.T. Irwin,Yuu Ishii,Natalia Ewa Janowicz,Adam C. Jones,Ambar Kachale,Konomi Fujimura-Kamada,Binnypreet Kaur,Jonathan Z. Kaye,Eleanna Kazana,Patrick J. Keeling,Nicole King,Lawrence A. Klobutcher,Noelia Lander,Imen Lassadi,Zhu-Hong Li,Senjie Lin,Jean Claude Lozano,Fulei Luan,Shinichiro Maruyama,Tamara Matute,Cristina Miceli,Jun Minagawa,Jun Minagawa,Mark Moosburner,Sebastián R. Najle,Sebastián R. Najle,Deepak Nanjappa,Isabel C. Nimmo,Luke M. Noble,Luke M. Noble,Anna M. G. Novák Vanclová,Mariusz Nowacki,Isaac Núñez,Arnab Pain,Arnab Pain,Angela Piersanti,Sandra Pucciarelli,Jan Pyrih,Jan Pyrih,Joshua S. Rest,Mariana Rius,Deborah L. Robertson,Albane Ruaud,Albane Ruaud,Iñaki Ruiz-Trillo,Iñaki Ruiz-Trillo,Monika Abedin Sigg,Pamela A. Silver,Claudio H. Slamovits,G. Jason Smith,Brittany N. Sprecher,Rowena Stern,Estienne C. Swart,Estienne C. Swart,Anastasios D. Tsaousis,Lev Tsypin,Lev Tsypin,Aaron P. Turkewitz,Jernej Turnšek,Matus Valach,Valérie Vergé,Peter von Dassow,Tobias von der Haar,Ross F. Waller,Lu Wang,Xiaoxue Wen,Glen L. Wheeler,April Woods,Huan Zhang,Thomas Mock,Alexandra Z. Worden,Julius Lukeš +123 more
TL;DR: The development of genetic tools in a range of protists primarily from marine environments are reported on, providing a roadmap for developing genetically tractable organisms.
Journal ArticleDOI
UniEuk: Time to Speak a Common Language in Protistology!
Cédric Berney,Andreea Ciuprina,Sara J. Bender,Juliet Brodie,Virginia P. Edgcomb,Eunsoo Kim,Jeena Rajan,Laura Wegener Parfrey,Sina M. Adl,Stéphane Audic,David Bass,David Bass,David A. Caron,Guy Cochrane,Lucas Czech,Micah Dunthorn,Stefan Geisen,Frank Oliver Glöckner,Frank Oliver Glöckner,Frédéric Mahé,Christian Quast,Jonathan Z. Kaye,Alastair G. B. Simpson,Alexandros Stamatakis,Alexandros Stamatakis,Javier del Campo,Pelin Yilmaz,Colomban de Vargas +27 more
TL;DR: The UniEuk taxonomy is an open, inclusive, community‐based and expert‐driven international initiative to build a flexible, adaptive universal taxonomic framework for eukaryotes that is directly implemented in the European Nucleotide Archive at EMBL‐EBI, ensuring its broad use and long‐term preservation as a reference taxonomy.
Journal ArticleDOI
Parasite microbiome project: Grand challenges
Nolwenn M. Dheilly,Joaquín Martínez Martínez,Karyna Rosario,Paul J. Brindley,Raina N. Fichorova,Jonathan Z. Kaye,Kevin D. Kohl,Laura J. Knoll,Julius Lukeš,Susan L. Perkins,Robert Poulin,Lynn M. Schriml,Luke R. Thompson,Luke R. Thompson +13 more
TL;DR: This paper presents a meta-anatomy of the response of Response to EMMARM, a probabilistic approach to assess the immune system’s response to EMT, and some of the mechanisms behind its development.
Journal ArticleDOI
Natural experiments and long-term monitoring are critical to understand and predict marine host-microbe ecology and evolution.
Matthieu Leray,Laetitia G. E. Wilkins,Amy Apprill,Holly M. Bik,Friederike Clever,Friederike Clever,Sean R. Connolly,Marina E. De León,Marina E. De León,J. Emmett Duffy,Leïla Ezzat,Sarah A. Gignoux-Wolfsohn,Edward Allen Herre,Jonathan Z. Kaye,David I. Kline,Jordan G. Kueneman,Melissa K. McCormick,W. Owen McMillan,Aaron O'Dea,Aaron O'Dea,Tiago José Pereira,Jillian M. Petersen,Daniel F. Petticord,Mark E. Torchin,Rebecca Vega Thurber,Elin Videvall,Elin Videvall,William T. Wcislo,Benedict Yuen,Jonathan A. Eisen +29 more
TL;DR: In this article, the authors argue that significantly advancing our understanding of how hostassociated microbes shape marine hosts' plastic and adaptive responses to environmental change requires (i) recognizing that individual host-microbe systems do not exist in an ecological or evolutionary vacuum and (ii) expanding the field toward long-term, multidisciplinary research on entire communities of hosts and microbes.