J
Junta Sugiyama
Researcher at University of Tokyo
Publications - 107
Citations - 8518
Junta Sugiyama is an academic researcher from University of Tokyo. The author has contributed to research in topics: Phylogenetic tree & Phylogenetics. The author has an hindex of 34, co-authored 106 publications receiving 8021 citations.
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Journal ArticleDOI
A higher-level phylogenetic classification of the Fungi
David S. Hibbett,Manfred Binder,Joseph F. Bischoff,Meredith Blackwell,Paul F. Cannon,Ove E. Eriksson,Sabine M. Huhndorf,Timothy Y. James,Paul M. Kirk,Robert Lücking,H. Thorsten Lumbsch,François Lutzoni,P. Brandon Matheny,David J. McLaughlin,Martha J. Powell,Scott A. Redhead,Conrad L. Schoch,Joseph W. Spatafora,Joost A. Stalpers,Rytas Vilgalys,M. Catherine Aime,André Aptroot,Robert Bauer,Dominik Begerow,Gerald L. Benny,Lisa A. Castlebury,Pedro W. Crous,Yu-Cheng Dai,Walter Gams,David M. Geiser,Gareth W. Griffith,Cécile Gueidan,David L. Hawksworth,Geir Hestmark,Kentaro Hosaka,Richard A. Humber,Kevin D. Hyde,Joseph E. Ironside,Urmas Kõljalg,Cletus P. Kurtzman,Karl-Henrik Larsson,Robert W. Lichtwardt,Joyce E. Longcore,Jolanta Miadlikowska,Andrew N. Miller,Jean-Marc Moncalvo,Sharon E. Mozley-Standridge,Franz Oberwinkler,Erast Parmasto,Valérie Reeb,Jack D. Rogers,Claude Roux,Leif Ryvarden,José Paulo Sampaio,Arthur Schüssler,Junta Sugiyama,R. Greg Thorn,Leif Tibell,Wendy A. Untereiner,Christopher Walker,Zheng Wang,Alex Weir,Michael Weiss,Merlin M. White,Katarina Winka,Yi-Jian Yao,Ning Zhang +66 more
TL;DR: A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community.
Journal ArticleDOI
Reconstructing the early evolution of Fungi using a six-gene phylogeny
Timothy Y. James,Frank Kauff,Conrad L. Schoch,P. Brandon Matheny,Valérie Hofstetter,Cymon J. Cox,Cymon J. Cox,Gail Celio,Cécile Gueidan,Emily Fraker,Jolanta Miadlikowska,H. Thorsten Lumbsch,Alexandra Rauhut,Valérie Reeb,A. Elizabeth Arnold,A. Elizabeth Arnold,Anja Amtoft,Jason E. Stajich,Kentaro Hosaka,Kentaro Hosaka,Gi-Ho Sung,Desiree Johnson,Ben O'Rourke,Michael Crockett,Manfred Binder,Judd M. Curtis,Jason C. Slot,Zheng Wang,Zheng Wang,Andrew W. Wilson,Arthur Schüßler,Joyce E. Longcore,Kerry O'Donnell,Sharon E. Mozley-Standridge,David Porter,Peter M. Letcher,Martha J. Powell,John W. Taylor,Merlin M. White,Gareth W. Griffith,David R. Davies,Richard A. Humber,Joseph B. Morton,Junta Sugiyama,Amy Y. Rossman,Jack D. Rogers,Donald H. Pfister,David Hewitt,Karen Hansen,Sarah Hambleton,R. A. Shoemaker,Jan Kohlmeyer,Brigitte Volkmann-Kohlmeyer,Robert A. Spotts,Maryna Serdani,Pedro W. Crous,Karen W. Hughes,Kenji Matsuura,Ewald Langer,Gitta Langer,Wendy A. Untereiner,Robert Lücking,Burkhard Büdel,David M. Geiser,André Aptroot,Paul Diederich,Imke Schmitt,Imke Schmitt,Matthias Schultz,Rebecca Yahr,Rebecca Yahr,David S. Hibbett,François Lutzoni,David J. McLaughlin,Joseph W. Spatafora,Rytas Vilgalys +75 more
TL;DR: It is indicated that there may have been at least four independent losses of the flagellum in the kingdom Fungi, and the enigmatic microsporidia seem to be derived from an endoparasitic chytrid ancestor similar to Rozella allomycis, on the earliest diverging branch of the fungal phylogenetic tree.
Journal ArticleDOI
Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits
François Lutzoni,Frank Kauff,Cymon J. Cox,David J. McLaughlin,Gail Celio,Bryn T. M. Dentinger,Mahajabeen Padamsee,David S. Hibbett,Timothy Y. James,Elisabeth Baloch,Martin Grube,Valérie Reeb,Valérie Hofstetter,Conrad L. Schoch,A. Elizabeth Arnold,Jolanta Miadlikowska,Jolanta Miadlikowska,Joseph W. Spatafora,Desiree Johnson,Sarah Hambleton,Michael Crockett,R. A. Shoemaker,Gi-Ho Sung,Robert Lücking,Thorsten Lumbsch,Kerry O'Donnell,Manfred Binder,Paul Diederich,Damien Ertz,Cécile Gueidan,Karen Hansen,Richard C. Harris,Kentaro Hosaka,Young Woon Lim,Young Woon Lim,Brandon Matheny,Hiromi Nishida,Donald H. Pfister,Jack D. Rogers,Amy Y. Rossman,Imke Schmitt,Harrie J. M. Sipman,Jeffrey K. Stone,Junta Sugiyama,Rebecca Yahr,Rytas Vilgalys +45 more
TL;DR: This study provides a phylogenetic synthesis for the Fungi and a framework for future phylogenetic studies on fungi and the impact of this newly discovered phylogenetic structure on supraordinal classifications is discussed.
Journal ArticleDOI
The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits
Conrad L. Schoch,Gi-Ho Sung,Francesc López-Giráldez,Jeffrey P. Townsend,Jolanta Miadlikowska,Valérie Hofstetter,Barbara Robbertse,P. Brandon Matheny,P. Brandon Matheny,Frank Kauff,Zheng Wang,Cécile Gueidan,Rachael M. Andrie,Kristin M. Trippe,Linda M. Ciufetti,Anja Amtoft Wynns,Emily Fraker,Brendan P. Hodkinson,Gregory Bonito,Johannes Z. Groenewald,Mahdi Arzanlou,Mahdi Arzanlou,G. Sybren de Hoog,Pedro W. Crous,David Hewitt,Donald H. Pfister,Kristin R. Peterson,Marieka Gryzenhout,Michael J. Wingfield,André Aptroot,Sung-Oui Suh,Meredith Blackwell,David M. Hillis,Gareth W. Griffith,Lisa A. Castlebury,Amy Y. Rossman,H. Thorsten Lumbsch,Robert Lücking,Burkhard Büdel,Alexandra Rauhut,Paul Diederich,Damien Ertz,David M. Geiser,Kentaro Hosaka,Patrik Inderbitzin,Jan Kohlmeyer,Brigitte Volkmann-Kohlmeyer,Lizel Mostert,Kerry O'Donnell,Harrie J. M. Sipman,Jack D. Rogers,R. A. Shoemaker,Junta Sugiyama,Richard C. Summerbell,Wendy A. Untereiner,Peter R. Johnston,Soili Stenroos,Alga Zuccaro,Paul S. Dyer,Peter D. Crittenden,Mariette S. Cole,Karen Hansen,James M. Trappe,Rebecca Yahr,Franois Lutzoni,Joseph W. Spatafora +65 more
TL;DR: A 6-gene, 420-species maximum-likelihood phylogeny of Ascomycota, the largest phylum of Fungi, and a phylogenetic informativeness analysis of all 6 genes and a series of ancestral character state reconstructions support a terrestrial, saprobic ecology as ancestral are presented.
Journal ArticleDOI
Detection of seven major evolutionary lineages in cyanobacteria based on the 16S rRNA gene sequence analysis with new sequences of five marine Synechococcus strains.
TL;DR: Analysis of 16S rRNA gene phylogeny by the maximum-likelihood and neighbor-joining methods combined with rate homogeneous and heterogeneous models revealed seven major evolutionary lineages of the cyanobacteria, including prochlorophycean organisms.