T
Thomas L. Parchman
Researcher at University of Nevada, Reno
Publications - 83
Citations - 4292
Thomas L. Parchman is an academic researcher from University of Nevada, Reno. The author has contributed to research in topics: Population & Reproductive isolation. The author has an hindex of 32, co-authored 72 publications receiving 3654 citations. Previous affiliations of Thomas L. Parchman include New Mexico State University & University of Wyoming.
Papers
More filters
Journal ArticleDOI
Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery
TL;DR: This sequencing study of expressed genes from Lodgepole pine, including their assembly and annotation, and their potential for molecular marker development to support population and association genetic studies illustrate the utility of next generation sequencing as a basis for marker development and population genomics in non-model species.
Journal ArticleDOI
Stick Insect Genomes Reveal Natural Selection’s Role in Parallel Speciation
Víctor Soria-Carrasco,Zachariah Gompert,Aaron A. Comeault,Timothy E. Farkas,Thomas L. Parchman,J. Spencer Johnston,C. Alex Buerkle,Jeffrey L. Feder,Jens Bast,Tanja Schwander,Scott P. Egan,Bernard J. Crespi,Patrik Nosil +12 more
TL;DR: This article analyzed whole-genome divergence between replicate pairs of stick insect populations that are adapted to different host plants and undergoing parallel speciation, and found thousands of modest-sized genomic regions of accentuated divergence between populations, most of which are unique to individual population pairs.
Supplementary Materials for Stick Insect Genomes Reveal Natural Selection's Role in Parallel Speciation
Víctor Soria-Carrasco,Zachariah Gompert,Aaron A. Comeault,Timothy E. Farkas,Thomas L. Parchman,J. Spencer Johnston,C. Alex Buerkle,Jeffrey L. Feder,Jens Bast,Tanja Schwander,Scott P. Egan,Bernard J. Crespi,Patrik Nosil +12 more
TL;DR: This article analyzed whole-genome divergence between replicate pairs of stick insect populations that are adapted to different host plants and undergoing parallel speciation and found thousands of modest-sized genomic regions of accentuated divergence between populations, most of which are unique to individual population pairs.
Journal ArticleDOI
Genome‐wide association genetics of an adaptive trait in lodgepole pine
Thomas L. Parchman,Zachariah Gompert,Joann Mudge,Faye D. Schilkey,Craig W. Benkman,C. Alex Buerkle +5 more
TL;DR: The authors used a Bayesian generalized linear model (GLM) to test for an association between genotypic variation at these loci and serotiny, finding that 50% of the variance in the genotype across these 11 loci explained the variation in serotonicity.
Journal ArticleDOI
Dense sampling of bird diversity increases power of comparative genomics.
Shaohong Feng,Josefin Stiller,Yuan Deng,Joel Armstrong,Joel Armstrong,Qi Fang,Andrew Hart Reeve,Duo Xie,Guangji Chen,Chunxue Guo,Brant C. Faircloth,Bent O. Petersen,Zongji Wang,Qi Zhou,Qi Zhou,Mark Diekhans,Mark Diekhans,Wanjun Chen,Sergio Andreu-Sánchez,Ashot Margaryan,Ashot Margaryan,Jason T. Howard,Carole A. Parent,George Pacheco,Mikkel-Holger S. Sinding,Lara Puetz,Emily Cavill,Ângela M. Ribeiro,Leopold Eckhart,Jon Fjeldså,Peter A. Hosner,Robb T. Brumfield,Les Christidis,Mads F. Bertelsen,Thomas Sicheritz-Pontén,Dieter Thomas Tietze,Bruce C. Robertson,Gang Song,Gerald Borgia,Santiago Claramunt,Santiago Claramunt,Irby J. Lovette,Saul J. Cowen,Peter Njoroge,John P. Dumbacher,Oliver A. Ryder,Jérôme Fuchs,Michael Bunce,David W. Burt,Joel Cracraft,Guanliang Meng,Shannon J. Hackett,Peter G. Ryan,Knud A. Jønsson,Ian G. Jamieson,Rute R. da Fonseca,Edward L. Braun,Peter Houde,Siavash Mirarab,Alexander Suh,Alexander Suh,Bengt Hansson,Suvi Ponnikas,Hanna Sigeman,Martin Stervander,Martin Stervander,Paul B. Frandsen,Paul B. Frandsen,Henriette van der Zwan,Rencia van der Sluis,Carina Visser,Christopher N. Balakrishnan,Andrew G. Clark,John W. Fitzpatrick,Reed Bowman,Nancy F. Chen,Alison Cloutier,Timothy B. Sackton,Scott V. Edwards,Dustin J. Foote,Subir B. Shakya,Frederick H. Sheldon,Alain Vignal,André E. R. Soares,Beth Shapiro,Jacob González-Solís,Joan Ferrer-Obiol,Julio Rozas,Marta Riutort,Anna Tigano,Anna Tigano,Vicki L. Friesen,Love Dalén,Araxi O. Urrutia,Araxi O. Urrutia,Tamás Székely,Yang Liu,Michael G. Campana,André Corvelo,Robert C. Fleischer,Kim Rutherford,Neil J. Gemmell,Nicolas Dussex,Nicolas Dussex,Henrik Mouritsen,Nadine Thiele,Kira E. Delmore,Kira E. Delmore,Miriam Liedvogel,Andre Franke,Marc P. Hoeppner,Oliver Krone,Adam M. Fudickar,Borja Milá,Ellen D. Ketterson,Andrew E. Fidler,Guillermo Friis,Ángela M. Parody-Merino,Phil F. Battley,Murray P. Cox,Nicholas Costa Barroso Lima,Francisco Prosdocimi,Thomas L. Parchman,Barney A. Schlinger,Bette A. Loiselle,John G. Blake,Haw Chuan Lim,Haw Chuan Lim,Lainy B. Day,Matthew J. Fuxjager,Maude W. Baldwin,Michael J. Braun,Morgan Wirthlin,Rebecca B. Dikow,T. Brandt Ryder,Glauco Camenisch,Lukas F. Keller,Jeffrey M. DaCosta,Mark E. Hauber,Matthew I. M. Louder,Christopher C. Witt,Jimmy A. McGuire,Joann Mudge,Libby C. Megna,Matthew D. Carling,Biao Wang,Scott A. Taylor,Glaucia Del-Rio,Alexandre Aleixo,Ana Tereza Ribeiro de Vasconcelos,Claudio V. Mello,Jason T. Weir,Jason T. Weir,David Haussler,David Haussler,Qiye Li,Huanming Yang,Jian Wang,Fumin Lei,Carsten Rahbek,M. Thomas P. Gilbert,M. Thomas P. Gilbert,Gary R. Graves,Gary R. Graves,Erich D. Jarvis,Erich D. Jarvis,Erich D. Jarvis,Benedict Paten,Benedict Paten,Guojie Zhang +169 more
TL;DR: The densely sampled alignment provides a single-base-pair map of selection, has more than doubled the fraction of bases that are confidently predicted to be under conservation and reveals extensive patterns of weak selection in predominantly non-coding DNA.