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Araxi O. Urrutia
Researcher at University of Bath
Publications - 49
Citations - 2851
Araxi O. Urrutia is an academic researcher from University of Bath. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 20, co-authored 44 publications receiving 2364 citations. Previous affiliations of Araxi O. Urrutia include National Autonomous University of Mexico.
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Journal ArticleDOI
Clustering of housekeeping genes provides a unified model of gene order in the human genome.
TL;DR: A unified model of gene clustering is provided that reports that genes that are expressed in most tissues (housekeeping genes) show strong clustering, and shows that the apparent clustering of genes with high expression rates is a consequence of the clusters of housekeeping genes.
Journal ArticleDOI
The Signature of Selection Mediated by Expression on Human Genes
TL;DR: It is found that, even after controlling for regional effects, highly expressed genes code for smaller proteins, have less intronic DNA, and higher codon and amino acid biases.
Journal ArticleDOI
YAP is essential for tissue tension to ensure vertebrate 3D body shape
Sean Porazinski,Huijia Wang,Yoichi Asaoka,Martin Behrndt,Tatsuo Miyamoto,Hitoshi Morita,Shoji Hata,Takashi Sasaki,S. F. Gabriel Krens,Yumi Osada,Satoshi Asaka,Akihiro Momoi,Sarah Linton,Joel B. Miesfeld,Brian A. Link,Takeshi Senga,Atahualpa Castillo-Morales,Araxi O. Urrutia,Nobuyoshi Shimizu,Hideaki Nagase,Shinya Matsuura,Stefan Bagby,Hisato Kondoh,Hisato Kondoh,Hiroshi Nishina,Carl-Philipp Heisenberg,Makoto Furutani-Seiki +26 more
TL;DR: A unique medaka fish mutant, hirame, is reported, which is sensitive to deformation by gravity, and shows that actomyosin-mediated tissue tension is reduced in hir embryos, leading to tissue flattening and tissue misalignment, both of which contribute to body flattening.
Journal ArticleDOI
Dense sampling of bird diversity increases power of comparative genomics.
Shaohong Feng,Josefin Stiller,Yuan Deng,Joel Armstrong,Joel Armstrong,Qi Fang,Andrew Hart Reeve,Duo Xie,Guangji Chen,Chunxue Guo,Brant C. Faircloth,Bent O. Petersen,Zongji Wang,Qi Zhou,Qi Zhou,Mark Diekhans,Mark Diekhans,Wanjun Chen,Sergio Andreu-Sánchez,Ashot Margaryan,Ashot Margaryan,Jason T. Howard,Carole A. Parent,George Pacheco,Mikkel-Holger S. Sinding,Lara Puetz,Emily Cavill,Ângela M. Ribeiro,Leopold Eckhart,Jon Fjeldså,Peter A. Hosner,Robb T. Brumfield,Les Christidis,Mads F. Bertelsen,Thomas Sicheritz-Pontén,Dieter Thomas Tietze,Bruce C. Robertson,Gang Song,Gerald Borgia,Santiago Claramunt,Santiago Claramunt,Irby J. Lovette,Saul J. Cowen,Peter Njoroge,John P. Dumbacher,Oliver A. Ryder,Jérôme Fuchs,Michael Bunce,David W. Burt,Joel Cracraft,Guanliang Meng,Shannon J. Hackett,Peter G. Ryan,Knud A. Jønsson,Ian G. Jamieson,Rute R. da Fonseca,Edward L. Braun,Peter Houde,Siavash Mirarab,Alexander Suh,Alexander Suh,Bengt Hansson,Suvi Ponnikas,Hanna Sigeman,Martin Stervander,Martin Stervander,Paul B. Frandsen,Paul B. Frandsen,Henriette van der Zwan,Rencia van der Sluis,Carina Visser,Christopher N. Balakrishnan,Andrew G. Clark,John W. Fitzpatrick,Reed Bowman,Nancy F. Chen,Alison Cloutier,Timothy B. Sackton,Scott V. Edwards,Dustin J. Foote,Subir B. Shakya,Frederick H. Sheldon,Alain Vignal,André E. R. Soares,Beth Shapiro,Jacob González-Solís,Joan Ferrer-Obiol,Julio Rozas,Marta Riutort,Anna Tigano,Anna Tigano,Vicki L. Friesen,Love Dalén,Araxi O. Urrutia,Araxi O. Urrutia,Tamás Székely,Yang Liu,Michael G. Campana,André Corvelo,Robert C. Fleischer,Kim Rutherford,Neil J. Gemmell,Nicolas Dussex,Nicolas Dussex,Henrik Mouritsen,Nadine Thiele,Kira E. Delmore,Kira E. Delmore,Miriam Liedvogel,Andre Franke,Marc P. Hoeppner,Oliver Krone,Adam M. Fudickar,Borja Milá,Ellen D. Ketterson,Andrew E. Fidler,Guillermo Friis,Ángela M. Parody-Merino,Phil F. Battley,Murray P. Cox,Nicholas Costa Barroso Lima,Francisco Prosdocimi,Thomas L. Parchman,Barney A. Schlinger,Bette A. Loiselle,John G. Blake,Haw Chuan Lim,Haw Chuan Lim,Lainy B. Day,Matthew J. Fuxjager,Maude W. Baldwin,Michael J. Braun,Morgan Wirthlin,Rebecca B. Dikow,T. Brandt Ryder,Glauco Camenisch,Lukas F. Keller,Jeffrey M. DaCosta,Mark E. Hauber,Matthew I. M. Louder,Christopher C. Witt,Jimmy A. McGuire,Joann Mudge,Libby C. Megna,Matthew D. Carling,Biao Wang,Scott A. Taylor,Glaucia Del-Rio,Alexandre Aleixo,Ana Tereza Ribeiro de Vasconcelos,Claudio V. Mello,Jason T. Weir,Jason T. Weir,David Haussler,David Haussler,Qiye Li,Huanming Yang,Jian Wang,Fumin Lei,Carsten Rahbek,M. Thomas P. Gilbert,M. Thomas P. Gilbert,Gary R. Graves,Gary R. Graves,Erich D. Jarvis,Erich D. Jarvis,Erich D. Jarvis,Benedict Paten,Benedict Paten,Guojie Zhang +169 more
TL;DR: The densely sampled alignment provides a single-base-pair map of selection, has more than doubled the fraction of bases that are confidently predicted to be under conservation and reveals extensive patterns of weak selection in predominantly non-coding DNA.
Journal ArticleDOI
Codon Usage Bias Covaries With Expression Breadth and the Rate of Synonymous Evolution in Humans, but This Is Not Evidence for Selection
TL;DR: A new method to measure codon bias is presented that corrects for background nucleotide content and applies it to 2396 human genes, concluding that there is no evidence for selection on codon usage in humans.