Y
Yumi Yamaguchi-Kabata
Researcher at Tohoku University
Publications - 52
Citations - 2399
Yumi Yamaguchi-Kabata is an academic researcher from Tohoku University. The author has contributed to research in topics: Population & Gene. The author has an hindex of 19, co-authored 48 publications receiving 2140 citations. Previous affiliations of Yumi Yamaguchi-Kabata include National Institute of Advanced Industrial Science and Technology & Kyoto University.
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Journal ArticleDOI
Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones
Tadashi Imanishi,Takeshi Itoh,Yutaka Suzuki,Claire O'Donovan,Satoshi Fukuchi,Kanako O. Koyanagi,Roberto A. Barrero,Takuro Tamura,Yumi Yamaguchi-Kabata,Motohiko Tanino,Kei Yura,Satoru Miyazaki,Kazuho Ikeo,Keiichi Homma,Arek Kasprzyk,Tetsuo Nishikawa,Mika Hirakawa,Jean Thierry-Mieg,Jean Thierry-Mieg,Danielle Thierry-Mieg,Danielle Thierry-Mieg,Jennifer L. Ashurst,Libin Jia,Mitsuteru Nakao,Michael A. Thomas,Nicola Mulder,Youla Karavidopoulou,Lihua Jin,Sangsoo Kim,Tomohiro Yasuda,Boris Lenhard,Eric Eveno,Yoshiyuki Suzuki,Chisato Yamasaki,Jun-ichi Takeda,Craig A. Gough,Phillip Hilton,Yasuyuki Fujii,Hiroaki Sakai,Susumu Tanaka,Clara Amid,Matthew I. Bellgard,Maria de Fatima Bonaldo,Hidemasa Bono,Susan Bromberg,Anthony J. Brookes,Elspeth A. Bruford,Piero Carninci,Claude Chelala,Christine Couillault,Sandro J. de Souza,Marie-Anne Debily,Marie-Dominique Devignes,Inna Dubchak,Toshinori Endo,Anne Estreicher,Eduardo Eyras,Kaoru Fukami-Kobayashi,Gopal R. Gopinath,Esther Graudens,Yoonsoo Hahn,Michael Han,Ze-Guang Han,Kousuke Hanada,Hideki Hanaoka,Erimi Harada,Katsuyuki Hashimoto,Ursula Hinz,Momoki Hirai,Teruyoshi Hishiki,Ian Hopkinson,Sandrine Imbeaud,Hidetoshi Inoko,Hidetoshi Inoko,Alexander Kanapin,Yayoi Kaneko,Takeya Kasukawa,Janet Kelso,Paul J. Kersey,Reiko Kikuno,Kouichi Kimura,Bernhard Korn,Vladimir Kuryshev,Izabela Makalowska,Takashi Makino,Shuhei Mano,Régine Mariage-Samson,Jun Mashima,Hideo Matsuda,Hans-Werner Mewes,Shinsei Minoshima,Shinsei Minoshima,Keiichi Nagai,Hideki Nagasaki,Naoki Nagata,Rajni Nigam,Osamu Ogasawara,Osamu Ohara,Masafumi Ohtsubo,Norihiro Okada,Toshihisa Okido,Satoshi Oota,Motonori Ota,Toshio Ota,Tetsuji Otsuki,Dominique Piatier-Tonneau,Annemarie Poustka,Shuang-Xi Ren,Naruya Saitou,Katsunaga Sakai,Shigetaka Sakamoto,Ryuichi Sakate,Ingo Schupp,Florence Servant,Stephen T. Sherry,Rie Shiba,Nobuyoshi Shimizu,Mary Shimoyama,Andrew J. G. Simpson,Bento Soares,Charles A. Steward,Makiko Suwa,Mami Suzuki,Aiko Takahashi,Gen Tamiya,Gen Tamiya,Hiroshi Tanaka,Todd D. Taylor,Joseph D. Terwilliger,Per Unneberg,Vamsi Veeramachaneni,Shinya Watanabe,Laurens G. Wilming,Norikazu Yasuda,Hyang-Sook Yoo,Marvin Stodolsky,Wojciech Makalowski,Mitiko Go,Kenta Nakai,Toshihisa Takagi,Minoru Kanehisa,Yoshiyuki Sakaki,John Quackenbush,Yasushi Okazaki,Yoshihide Hayashizaki,Winston Hide,Ranajit Chakraborty,Ken Nishikawa,Hideaki Sugawara,Yoshio Tateno,Zhu Chen,Zhu Chen,Michio Oishi,Peter J. Tonellato,Rolf Apweiler,Kousaku Okubo,Kousaku Okubo,Lukas Wagner,Stefan Wiemann,Robert L. Strausberg,Takao Isogai,Charles Auffray,Nobuo Nomura,Takashi Gojobori,Takashi Gojobori,Takashi Gojobori,Sumio Sugano,Sumio Sugano +167 more
TL;DR: The H-InvDB as discussed by the authors is a database of 41,118 full-length cDNAs that capture the gene transcripts as complete functional cassettes, providing an unequivocal report of structural and functional diversity at the gene level.
Journal ArticleDOI
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals
Masao Nagasaki,Jun Yasuda,Fumiki Katsuoka,Naoki Nariai,Kaname Kojima,Yosuke Kawai,Yumi Yamaguchi-Kabata,Junji Yokozawa,Inaho Danjoh,Sakae Saito,Yukuto Sato,Takahiro Mimori,Kaoru Tsuda,Rumiko Saito,Xiaoqing Pan,Satoshi Nishikawa,Shin Ito,Yoko Kuroki,Osamu Tanabe,Nobuo Fuse,Shinichi Kuriyama,Hideyasu Kiyomoto,Atsushi Hozawa,Naoko Minegishi,James Douglas Engel,Kengo Kinoshita,Shigeo Kure,Nobuo Yaegashi,Masayuki Yamamoto +28 more
TL;DR: The value of high-coverage sequencing for constructing population-specific variant panels, which covers 99.0% SNVs of minor allele frequency ≥0.1%, is demonstrated, and its value for identifying causal rare variants of complex human disease phenotypes in genetic association studies is demonstrated.
Journal ArticleDOI
Japanese Population Structure, Based on SNP Genotypes from 7003 Individuals Compared to Other Ethnic Groups: Effects on Population-Based Association Studies
Yumi Yamaguchi-Kabata,Kazuyuki Nakazono,Atsushi Takahashi,Susumu Saito,Naoya Hosono,Michiaki Kubo,Yusuke Nakamura,Naoyuki Kamatani +7 more
TL;DR: Japanese population structure was examined by "Eigenanalysis," using the genotypes for 140,387 SNPs in 7003 Japanese individuals, along with 60 European, 60 African, and 90 East-Asian individuals, in the HapMap project, and genetic differentiation was observed.
Journal ArticleDOI
Human Immunodeficiency Virus Type 1 Intergroup (M/O) Recombination in Cameroon
Jun Takehisa,Leopold Zekeng,Eiji Ido,Yumi Yamaguchi-Kabata,Yumi Yamaguchi-Kabata,Innocent Mboudjeka,Yosuke Harada,Tomoyuki Miura,Lazare Kaptue,Masanori Hayami +9 more
TL;DR: Recombination between strains with such distant lineages may contribute substantially to generating new HIV-1 variants.
Journal ArticleDOI
3.5KJPNv2: an allele frequency panel of 3552 Japanese individuals including the X chromosome.
Shu Tadaka,Fumiki Katsuoka,Masao Ueki,Kaname Kojima,Satoshi Makino,Sakae Saito,Akihito Otsuki,Chinatsu Gocho,Mika Sakurai-Yageta,Inaho Danjoh,Ikuko N. Motoike,Yumi Yamaguchi-Kabata,Matsuyuki Shirota,Seizo Koshiba,Masao Nagasaki,Naoko Minegishi,Atsushi Hozawa,Shinichi Kuriyama,Atsushi Shimizu,Jun Yasuda,Nobuo Fuse,Gen Tamiya,Masayuki Yamamoto,Kengo Kinoshita +23 more
TL;DR: A new database provides information on the frequency of genetic variations within 3552 Japanese individuals, and facilitates comparisons with other populations, and is the first large-scale panel providing the frequencies of variants present on the X chromosome and on the mitochondria in the Japanese population.