J
Jun Mashima
Researcher at National Institute of Genetics
Publications - 26
Citations - 1870
Jun Mashima is an academic researcher from National Institute of Genetics. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 17, co-authored 25 publications receiving 1729 citations. Previous affiliations of Jun Mashima include University of Tsukuba & Graduate University for Advanced Studies.
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Journal ArticleDOI
Functional annotation of a full-length mouse cDNA collection
Jun Kawai,Akira Shinagawa,K. Shibata,Masayasu Yoshino,Masayoshi Itoh,Y. Ishii,Takahiro Arakawa,A. Hara,Yoshifumi Fukunishi,Hideaki Konno,Jun Adachi,S. Fukuda,Katsunori Aizawa,Masaki Izawa,Kenichiro Nishi,H. Kiyosawa,S. Kondo,Itaru Yamanaka,Takashi Saito,Yasushi Okazaki,Takashi Gojobori,Hidemasa Bono,Takeya Kasukawa,Rintaro Saito,Koji Kadota,Hideo Matsuda,Michael Ashburner,Serge Batalov,Thomas L. Casavant,W. Fleischmann,Terry Gaasterland,Carmela Gissi,Benjamin L. King,Hiromi Kochiwa,P. Kuehl,Simon L. Lewis,Y. Matsuo,Itoshi Nikaido,Graziano Pesole,John Quackenbush,Lynn M. Schriml,F. Staubli,R. Suzuki,Masaru Tomita,Lukas Wagner,Takanori Washio,K. Sakai,Toshihisa Okido,Masaaki Furuno,H. Aono,Richard M. Baldarelli,Gregory S. Barsh,Judith A. Blake,Dario Boffelli,N. Bojunga,Piero Carninci,M. F. De Bonaldo,Michael J. Brownstein,Carol J. Bult,Christopher D.M. Fletcher,Masaki Fujita,Manuela Gariboldi,Stefano Gustincich,David E. Hill,Marion A. Hofmann,David A. Hume,Mamoru Kamiya,Norman H. Lee,Paul A. Lyons,Luigi Marchionni,Jun Mashima,J. Mazzarelli,Peter Mombaerts,P. Nordone,Brian Z. Ring,M. Ringwald,Ivan Rodriguez,Naoaki Sakamoto,H. Sasaki,K. Sato,Christian Schönbach,Tsukasa Seya,Y. Shibata,Kai-Florian Storch,Harukazu Suzuki,Kazuhito Toyo-oka,Kuan Hong Wang,Charles J. Weitz,Charles A. Whittaker,L. Wilming,Anthony Wynshaw-Boris,K. Yoshida,Y. Hasegawa,Hideya Kawaji,Hideya Kawaji,S. Kohtsuki,Yoshihide Hayashizaki +96 more
TL;DR: The first RIKEN clone collection is described, which is one of the largest described for any organism and analysis of these cDNAs extends known gene families and identifies new ones.
Journal ArticleDOI
Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones
Tadashi Imanishi,Takeshi Itoh,Yutaka Suzuki,Claire O'Donovan,Satoshi Fukuchi,Kanako O. Koyanagi,Roberto A. Barrero,Takuro Tamura,Yumi Yamaguchi-Kabata,Motohiko Tanino,Kei Yura,Satoru Miyazaki,Kazuho Ikeo,Keiichi Homma,Arek Kasprzyk,Tetsuo Nishikawa,Mika Hirakawa,Jean Thierry-Mieg,Jean Thierry-Mieg,Danielle Thierry-Mieg,Danielle Thierry-Mieg,Jennifer L. Ashurst,Libin Jia,Mitsuteru Nakao,Michael A. Thomas,Nicola Mulder,Youla Karavidopoulou,Lihua Jin,Sangsoo Kim,Tomohiro Yasuda,Boris Lenhard,Eric Eveno,Yoshiyuki Suzuki,Chisato Yamasaki,Jun-ichi Takeda,Craig A. Gough,Phillip Hilton,Yasuyuki Fujii,Hiroaki Sakai,Susumu Tanaka,Clara Amid,Matthew I. Bellgard,Maria de Fatima Bonaldo,Hidemasa Bono,Susan Bromberg,Anthony J. Brookes,Elspeth A. Bruford,Piero Carninci,Claude Chelala,Christine Couillault,Sandro J. de Souza,Marie-Anne Debily,Marie-Dominique Devignes,Inna Dubchak,Toshinori Endo,Anne Estreicher,Eduardo Eyras,Kaoru Fukami-Kobayashi,Gopal R. Gopinath,Esther Graudens,Yoonsoo Hahn,Michael Han,Ze-Guang Han,Kousuke Hanada,Hideki Hanaoka,Erimi Harada,Katsuyuki Hashimoto,Ursula Hinz,Momoki Hirai,Teruyoshi Hishiki,Ian Hopkinson,Sandrine Imbeaud,Hidetoshi Inoko,Hidetoshi Inoko,Alexander Kanapin,Yayoi Kaneko,Takeya Kasukawa,Janet Kelso,Paul J. Kersey,Reiko Kikuno,Kouichi Kimura,Bernhard Korn,Vladimir Kuryshev,Izabela Makalowska,Takashi Makino,Shuhei Mano,Régine Mariage-Samson,Jun Mashima,Hideo Matsuda,Hans-Werner Mewes,Shinsei Minoshima,Shinsei Minoshima,Keiichi Nagai,Hideki Nagasaki,Naoki Nagata,Rajni Nigam,Osamu Ogasawara,Osamu Ohara,Masafumi Ohtsubo,Norihiro Okada,Toshihisa Okido,Satoshi Oota,Motonori Ota,Toshio Ota,Tetsuji Otsuki,Dominique Piatier-Tonneau,Annemarie Poustka,Shuang-Xi Ren,Naruya Saitou,Katsunaga Sakai,Shigetaka Sakamoto,Ryuichi Sakate,Ingo Schupp,Florence Servant,Stephen T. Sherry,Rie Shiba,Nobuyoshi Shimizu,Mary Shimoyama,Andrew J. G. Simpson,Bento Soares,Charles A. Steward,Makiko Suwa,Mami Suzuki,Aiko Takahashi,Gen Tamiya,Gen Tamiya,Hiroshi Tanaka,Todd D. Taylor,Joseph D. Terwilliger,Per Unneberg,Vamsi Veeramachaneni,Shinya Watanabe,Laurens G. Wilming,Norikazu Yasuda,Hyang-Sook Yoo,Marvin Stodolsky,Wojciech Makalowski,Mitiko Go,Kenta Nakai,Toshihisa Takagi,Minoru Kanehisa,Yoshiyuki Sakaki,John Quackenbush,Yasushi Okazaki,Yoshihide Hayashizaki,Winston Hide,Ranajit Chakraborty,Ken Nishikawa,Hideaki Sugawara,Yoshio Tateno,Zhu Chen,Zhu Chen,Michio Oishi,Peter J. Tonellato,Rolf Apweiler,Kousaku Okubo,Kousaku Okubo,Lukas Wagner,Stefan Wiemann,Robert L. Strausberg,Takao Isogai,Charles Auffray,Nobuo Nomura,Takashi Gojobori,Takashi Gojobori,Takashi Gojobori,Sumio Sugano,Sumio Sugano +167 more
TL;DR: The H-InvDB as discussed by the authors is a database of 41,118 full-length cDNAs that capture the gene transcripts as complete functional cassettes, providing an unequivocal report of structural and functional diversity at the gene level.
Journal ArticleDOI
DDBJ launches a new archive database with analytical tools for next-generation sequence data
Eli Kaminuma,Jun Mashima,Yuichi Kodama,Takashi Gojobori,Osamu Ogasawara,Kousaku Okubo,Toshihisa Takagi,Yasukazu Nakamura +7 more
TL;DR: A novel user announcement service using Really Simple Syndication (RSS) to deliver a list of data released from DDBJ on a daily basis and a semi-automatic annotation tool called the ‘DDBJ Read Annotation Pipeline’ was released as a preliminary step.
Journal ArticleDOI
DNA data bank of Japan (DDBJ) progress report.
Jun Mashima,Yuichi Kodama,Takehide Kosuge,Takatomo Fujisawa,Toshiaki Katayama,Hideki Nagasaki,Yoshihiro Okuda,Eli Kaminuma,Osamu Ogasawara,Kousaku Okubo,Yasukazu Nakamura,Toshihisa Takagi +11 more
TL;DR: The activities of the DDBJ Center over the past year including submissions to databases and improvements in services for data retrieval, analysis, and integration are reported on.
Journal ArticleDOI
DNA Data Bank of Japan
Jun Mashima,Yuichi Kodama,Takatomo Fujisawa,Toshiaki Katayama,Yoshihiro Okuda,Eli Kaminuma,Osamu Ogasawara,Kousaku Okubo,Yasukazu Nakamura,Toshihisa Takagi +9 more
TL;DR: The DDBJ Center improves semantic web technologies to integrate and to share biological data, for providing the RDF version of the sequence data, and introduces retrieval and analytical services running on the supercomputer system and their recent modifications.