Environmental Molecular Sciences Laboratory

About: Environmental Molecular Sciences Laboratory is a facility organization based out in Richland, Washington, United States. It is known for research contribution in the topics: Mass spectrometry & Ion. The organization has 1471 authors who have published 3010 publications receiving 169961 citations.

Noble gas-actinide compounds: Evidence for the formation of distinct CUO(Ar)(4-n)(Xe)(n) and CUO(Ar)(4-n)(Kr)(n) (n=1, 2, 3, 4) complexes

Abstract: Laser-ablated U atoms react with CO in excess argon to produce CUO, which gives rise to 852.5 and 804.3 cm-1 infrared absorptions for the triplet state CUO(Ar)n complex in solid argon at 7 K. Relativistic density functional calculations show that the CUO(Ar) complex is stable and that up to four or five argon atoms can complex to CUO. When 1−3% Xe is added to the argon/CO reagent mixture, strong absorptions appear at 848.0 and 801.3 cm-1 and dominate new four-band progressions, which increase on annealing to 35−50 K as Xe replaces Ar in the intimate coordination sphere. Analogous spectra are obtained with 1−2% Kr added. This work provides evidence for eight distinct CUO(Ng)n(Ar)4-n (Ng = Kr, Xe, n = 1, 2, 3, 4) complexes and the first characterization of neutral complexes involving four noble-gas atoms on one metal center.

Dynamic range expansion applied to mass spectrometry based on data-dependent selective ion ejection in capillary liquid chromatography fourier transform ion cyclotron resonance for enhanced proteome characterization.

Abstract: The characterization of cellular proteomes is important for understanding biochemical processes ranging from cell differentiation to cancer development. In one highly promising approach, whole protein extracts or fractions are digested (e.g., with trypsin) and injected into a packed capillary column for subsequent separation. The separated peptides are then introduced on-line to an electrospray ionization source of a Fourier transform ion cyclotron resonance (FTICR) mass spectrometer for the detection of peptide accurate mass tags that serve as biomarkers for their parent proteins. In this work, we report the use of data-dependent selective external ion ejection in conjunction with FTICR and on-line capillary LC separations for the enhanced characterization of peptide mixtures and a yeast extract proteome. The number of peptides identified in an LC-FTICR analysis of a yeast proteome digest employing data-dependent rf-only dipolar ejection of the most abundant ion species prior to ion accumulation was 40% ...

Transcriptomic characterization of Caecomyces churrovis: a novel, non-rhizoid-forming lignocellulolytic anaerobic fungus

Abstract: Anaerobic gut fungi are the primary colonizers of plant material in the rumen microbiome, but are poorly studied due to a lack of characterized isolates. While most genera of gut fungi form extensive rhizoidal networks, which likely participate in mechanical disruption of plant cell walls, fungi within the Caecomyces genus do not possess these rhizoids. Here, we describe a novel fungal isolate, Caecomyces churrovis, which forms spherical sporangia with a limited rhizoidal network yet secretes a diverse set of carbohydrate active enzymes (CAZymes) for plant cell wall hydrolysis. Despite lacking an extensive rhizoidal system, C. churrovis is capable of growth on fibrous substrates like switchgrass, reed canary grass, and corn stover, although faster growth is observed on soluble sugars. Gut fungi have been shown to use enzyme complexes (fungal cellulosomes) in which CAZymes bind to non-catalytic scaffoldins to improve biomass degradation efficiency. However, transcriptomic analysis and enzyme activity assays reveal that C. churrovis relies more on free enzymes compared to other gut fungal isolates. Only 15% of CAZyme transcripts contain non-catalytic dockerin domains in C. churrovis, compared to 30% in rhizoid-forming fungi. Furthermore, C. churrovis is enriched in GH43 enzymes that provide complementary hemicellulose degrading activities, suggesting that a wider variety of these activities are required to degrade plant biomass in the absence of an extensive fungal rhizoid network. Overall, molecular characterization of a non-rhizoid-forming anaerobic fungus fills a gap in understanding the roles of CAZyme abundance and associated degradation mechanisms during lignocellulose breakdown within the rumen microbiome.

Electronic and Structural Evolution and Chemical Bonding in Ditungsten Oxide Clusters: W2On- and W2On (n = 1−6)

Abstract: We report a systematic and comprehensive investigation of the electronic structures and chemical bonding in a series of ditungsten oxide clusters, W2On- and W2On (n = 1−6), using anion photoelectron spectroscopy and density functional theory (DFT) calculations. Well-resolved photoelectron spectra were obtained at several photon energies (2.331, 3.496, 4.661, 6.424, and 7.866 eV), and W 5d-based spectral features were clearly observed and distinguished from O 2p-based features. More complicated spectral features were observed for the oxygen-deficient clusters because of the W 5d electrons. With increasing oxygen content in W2On-, the photoelectron spectra were observed to shift gradually to higher binding energies, accompanied by a decreasing number of W 5d-derived features. A behavior of sequential oxidation as a result of charge transfers from W to O was clearly observed. A large energy gap (2.8 eV) was observed in the spectrum of W2O6-, indicating the high electronic stability of the stoichiometric W2O6...