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Open AccessJournal ArticleDOI

A new face and new challenges for Online Mendelian Inheritance in Man (OMIM

Joanna S. Amberger, +2 more
- 01 May 2011 - 
- Vol. 32, Iss: 5, pp 564-567
TLDR
The content of OMIM, the process and intent of disease classification and nosology, and anticipated improvements in the new Website are focused on.
Abstract
OMIM's task of cataloging the association between human phenotypes and their causative genes (the Morbid Map of the Genome) and classifying and naming newly recognized disorders is growing rapidly. Establishing the relationship between genotype and phenotype has become increasingly complex. New technologies such as genome-wide association studies (GWAS) and array comparative genomic hybridization (aCGH) define “risk alleles” that are inherently prone to substantial interpretation and modification. In addition, whole exome and genome sequencing are expected to result in many reports of new mendelian disorders and their causative genes. In preparation for the onslaught of new information, we have launched a new Website to allow a more comprehensive and structured view of the contents of OMIM and to improve interconnectivity with complementary clinical and basic science genetics resources. This article focuses on the content of OMIM, the process and intent of disease classification and nosology, and anticipated improvements in our new Website (http://www.omim.org). Hum Mutat 32:1–4, 2011. © 2011 Wiley-Liss, Inc.

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Citations
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ClinVar: public archive of relationships among sequence variation and human phenotype

TL;DR: To facilitate evaluation of the medical importance of each variant, ClinVar aggregates submissions with the same variation/phenotype combination, adds value from other NCBI databases, assigns a distinct accession of the format RCV000000000.0 and reports if there are conflicting clinical interpretations.
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Activities at the Universal Protein Resource (UniProt)

Rolf Apweiler, +133 more
TL;DR: The mission of the Universal Protein Resource (UniProt) is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequences and functional annotation.
Journal ArticleDOI

OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders.

TL;DR: Online Mendelian Inheritance in Man, OMIM®, is a comprehensive, authoritative and timely research resource of curated descriptions of human genes and phenotypes and the relationships between them.
Journal ArticleDOI

Disease Ontology: a backbone for disease semantic integration

TL;DR: The next iteration of the DO web browser will integrate DO's extended relations and logical definition representation along with these biomedical resource cross-mappings.
Journal ArticleDOI

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

Sebastian Köhler, +50 more
TL;DR: The updated HPO database is described, which provides annotations of 7,278 human hereditary syndromes listed in OMIM, Orphanet and DECIPHER to classes of the HPO, allowing integration of existing datasets and interoperability with multiple biomedical resources.
References
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Journal ArticleDOI

The Human Phenotype Ontology: A Tool for Annotating and Analyzing Human Hereditary Disease

TL;DR: A Human Phenotype Ontology with over 8000 terms representing individual phenotypic anomalies and all clinical entries in Online Mendelian Inheritance in Man with the terms of the HPO are annotated.
Journal ArticleDOI

Mendelian Inheritance in Man and its online version, OMIM.

TL;DR: The rapid progress in an important part of medical genetics and genomics is reviewed, as chronicled in MIM/OMIM over these 40 years, and the future challenges of OMIM are contemplated.
Journal ArticleDOI

The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information.

TL;DR: The Mammalian Phenotype Ontology enables robust annotation of mammalian phenotypes in the context of mutations, quantitative trait loci and strains that are used as models of human biology and disease.
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