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Complexome profile of Toxoplasma gondii mitochondria identifies divergent subunits of respiratory chain complexes including new subunits of cytochrome bc1 complex.

TLDR
In this paper, a complexome profiling proteomic approach was used to characterize the Toxoplasma mETC complexes and F1Fo-ATP synthase, and the authors identified and assigned 60 proteins to complexes II, IV and 1Fo -ATP-S synthase.
Abstract
The mitochondrial electron transport chain (mETC) and F1Fo-ATP synthase are of central importance for energy and metabolism in eukaryotic cells. The Apicomplexa, important pathogens of humans causing diseases such as toxoplasmosis and malaria, depend on their mETC in every known stage of their complicated life cycles. Here, using a complexome profiling proteomic approach, we have characterised the Toxoplasma mETC complexes and F1Fo-ATP synthase. We identified and assigned 60 proteins to complexes II, IV and F1Fo-ATP synthase of Toxoplasma, of which 16 have not been identified previously. Notably, our complexome profile elucidates the composition of the Toxoplasma complex III, the target of clinically used drugs such as atovaquone. We identified two new homologous subunits and two new parasite-specific subunits, one of which is broadly conserved in myzozoans. We demonstrate all four proteins are essential for complex III stability and parasite growth, and show their depletion leads to decreased mitochondrial potential, supporting their assignment as complex III subunits. Our study highlights the divergent subunit composition of the apicomplexan mETC and F1Fo-ATP synthase complexes and sets the stage for future structural and drug discovery studies.

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Journal ArticleDOI

Composition and stage dynamics of mitochondrial complexes in Plasmodium falciparum.

TL;DR: This article applied complexome profiling to map the inventory of protein complexes across the pathogenic asexual blood stages and the transmissible gametocyte stages of Plasmodium falciparum and found that respiratory chain complex components and linked metabolic pathways are up to 40 times more prevalent in gametocytes, while glycolytic enzymes are substantially reduced.
Journal ArticleDOI

Structures of Tetrahymena’s respiratory chain reveal the diversity of eukaryotic core metabolism

TL;DR: The structural and functional study of the T. thermophila respiratory chain reveals divergence in key components of eukaryotic respiration, thereby expanding the understanding of core metabolism andStructural analysis of Tetrahymena mitochondrial respiratory complexes illuminates the diversity of eUKaryotic cellular respiration.
Journal ArticleDOI

Complexome Profiling—Exploring Mitochondrial Protein Complexes in Health and Disease

TL;DR: The major findings obtained by complexome profiling are summarized; its advantages and current limitations are emphasized; multiple examples on how this tool could be applied to further investigate pathophysiological mechanisms are discussed and comment on the latest advances and opportunity areas to keep developing this methodology.
Posted ContentDOI

Differential contribution of two organelles of endosymbiotic origin to iron-sulfur cluster synthesis and overall fitness in Toxoplasma

TL;DR: In this paper, the authors investigated the relative contributions of these pathways to the fitness of Toxoplasma gondii, an apicomplexan parasite causing disease in humans, by generating specific mutants.
References
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Journal ArticleDOI

Analysis of relative gene expression data using real-time quantitative pcr and the 2(-delta delta c(t)) method

TL;DR: The 2-Delta Delta C(T) method as mentioned in this paper was proposed to analyze the relative changes in gene expression from real-time quantitative PCR experiments, and it has been shown to be useful in the analysis of realtime, quantitative PCR data.
Journal ArticleDOI

Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness

TL;DR: It is found that intraflagellar transport 20 mediates the ability of Ror2 signaling to induce the invasiveness of tumors that lack primary cilia, and IFT20 regulates the nucleation of Golgi-derived microtubules by affecting the GM130-AKAP450 complex.
Journal ArticleDOI

The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.

TL;DR: Two possible proton pathways for pumping, each spanning from the matrix to the cytosolic surfaces, were identified, including hydrogen bonds, internal cavities likely to contain water molecules, and structures that could form hydrogen bonds with small possible conformational change of amino acid side chains.
Journal ArticleDOI

A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core

TL;DR: The new version of the MPI Bioinformatics Toolkit is introduced, focusing on improved features for the comprehensive analysis of proteins, as well as on promoting teaching.
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