Genomic Exploration of the Hemiascomycetous Yeasts: 1. A set of yeast species for molecular evolution studies1
Jean-Luc Souciet,Michel Aigle,François Artiguenave,Gaëlle Blandin,Monique Bolotin-Fukuhara,Elisabeth Bon,Philippe Brottier,Serge Casaregola,Jacky de Montigny,Bernard Dujon,Pascal Durrens,Claude Gaillardin,Andrée Lépingle,Bertrand Llorente,Alain Malpertuy,Cécile Neuvéglise,Odile Ozier-Kalogeropoulos,Serge Potier,William Saurin,Fredj Tekaia,Claire Toffano-Nioche,Micheline Wésolowski-Louvel,Patrick Wincker,Jean Weissenbach +23 more
TLDR
A comparative genomics study of a homogeneous group of species classified as Hemiascomycetes, including Saccharomyces cerevisiae, allows to examine the conservation of chromosome maps, to identify the ‘yeast‐specific’ genes, and to review the distribution of gene families into functional classes.About:
This article is published in FEBS Letters.The article was published on 2000-12-22 and is currently open access. It has received 226 citations till now. The article focuses on the topics: Comparative genomics & Genome.read more
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Genome evolution in yeasts
Bernard Dujon,David James Sherman,Gilles Fischer,Pascal Durrens,Serge Casaregola,Ingrid Lafontaine,Jacky de Montigny,Christian Marck,Cécile Neuvéglise,Emmanuel Talla,Nicolas Goffard,Lionel Frangeul,Michel Aigle,Véronique Anthouard,Anna Babour,Valérie Barbe,Stéphanie Barnay,Sylvie Blanchin,Jean-Marie Beckerich,Emmanuelle Beyne,Claudine Bleykasten,Anita Boisramé,Jeanne Boyer,Laurence Cattolico,Fabrice Confanioleri,Antoine de Daruvar,Laurence Despons,Emmanuelle Fabre,Cécile Fairhead,Hélène Ferry-Dumazet,Alexis Groppi,Florence Hantraye,Christophe Hennequin,Nicolas Jauniaux,Philippe Joyet,Rym Kachouri,Alix Kerrest,Romain Koszul,Marc Lemaire,Isabelle Lesur,Laurence Ma,Héloïse Muller,Jean-Marc Nicaud,Macha Nikolski,Sophie Oztas,Odile Ozier-Kalogeropoulos,Stefan Pellenz,Serge Potier,Guy-Franck Richard,Marie-Laure Straub,Audrey Suleau,Dominique Swennen,Fredj Tekaia,Micheline Wésolowski-Louvel,Eric Westhof,Bénédicte Wirth,Maria Zeniou-Meyer,Ivan Zivanovic,Monique Bolotin-Fukuhara,Agnès Thierry,Christiane Bouchier,Bernard Caudron,Claude Scarpelli,Claude Gaillardin,Jean Weissenbach,Patrick Wincker,Jean-Luc Souciet +66 more
TL;DR: Analysis of chromosome maps and genome redundancies reveal that the different yeast lineages have evolved through a marked interplay between several distinct molecular mechanisms, including tandem gene repeat formation, segmental duplication, a massive genome duplication and extensive gene loss.
Journal ArticleDOI
Osmotic Stress Signaling and Osmoadaptation in Yeasts
TL;DR: An integrated understanding of osmoadaptation requires not only knowledge of the function of many uncharacterized genes but also further insight into the time line of events, their interdependence, their dynamics, and their spatial organization as well as the importance of subtle effects.
Journal ArticleDOI
MIPS: a database for genomes and protein sequences
Hans-Werner Mewes,Dmitrij Frishman,Ulrich Güldener,Gertrud Mannhaupt,Klaus F. X. Mayer,Martin Mokrejs,Burkhard Morgenstern,Martin Münsterkötter,Stephen Rudd,B. Weil +9 more
TL;DR: This report describes the systematic and up-to-date analysis of genomes (PEDANT), a comprehensive database of the yeast genome (MYGD), a database reflecting the progress in sequencing the Arabidopsis thaliana genome (MATD), the database of assembled, annotated human EST clusters (MEST), and the collection of protein sequence data within the framework of the PIR-International Protein Sequence Database (described elsewhere in this volume).
Journal ArticleDOI
MIPS: analysis and annotation of proteins from whole genomes
Hans-Werner Mewes,Clara Amid,Roland Arnold,Dmitrij Frishman,Ulrich Güldener,Gertrud Mannhaupt,Martin Münsterkötter,Philipp Pagel,Normann Strack,Volker Stümpflen,Jens Warfsmann,Andreas Ruepp +11 more
TL;DR: The Munich Information Center for Protein Sequences (MIPS at the GSF), Neuherberg, Germany, provides resources related to genome information and develops databases covering computable information such as the basic evolutionary relations among all genes.
Journal ArticleDOI
Yesterday's polyploids and the mystery of diploidization
TL;DR: Sequence-level studies on model organisms whose genomes show clearer evidence of ancient polyploidy are invaluable because they indicate what the evolutionary products of genome duplication can look like.
References
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Life with 6000 Genes
André Goffeau,Bart Barrell,Howard Bussey,Ronald W. Davis,Bernard Dujon,Horst Feldmann,Francis Galibert,J D Hoheisel,Claude Jacq,Mark Johnston,Edward J. Louis,Hans-Werner Mewes,Yasufumi Murakami,Peter Philippsen,Hervé Tettelin,Stephen G. Oliver +15 more
TL;DR: The genome of the yeast Saccharomyces cerevisiae has been completely sequenced through a worldwide collaboration and provides information about the higher order organization of yeast's 16 chromosomes and allows some insight into their evolutionary history.
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Genome sequence of the nematode C-elegans: A platform for investigating biology
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Molecular evidence for an ancient duplication of the entire yeast genome
TL;DR: A model is proposed in which this species is a degenerate tetraploid resulting from a whole-genome duplication that occurred after the divergence of Saccharomyces from Kluyveromyces, and protein pairs derived from this duplication event make up 13% of all yeast proteins.
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Molecular Biology and Pathogenicity of Mycoplasmas
TL;DR: There is now solid genetic support for the hypothesis that mycoplasmas have evolved as a branch of gram-positive bacteria by a process of reductive evolution and developed various genetic systems providing a highly plastic set of variable surface proteins to evade the host immune system.
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