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Mechanisms regulating zygotic genome activation.

TLDR
The maternal-to-zygotic transition (MZT) is the process by which the transcriptionally silent embryonic genome is gradually activated, and recent work indicates that transcriptional activators have an important role.
Abstract
Following fertilization, the two specified gametes must unite to create an entirely new organism. The genome is initially transcriptionally quiescent, allowing the zygote to be reprogrammed into a totipotent state. Gradually, the genome is activated through a process known as the maternal-to-zygotic transition, which enables zygotic gene products to replace the maternal supply that initiated development. This essential transition has been broadly characterized through decades of research in several model organisms. However, we still lack a full mechanistic understanding of how genome activation is executed and how this activation relates to the reprogramming of the zygotic chromatin architecture. Recent work highlights the central role of transcriptional activators and suggests that these factors may coordinate transcriptional activation with other developmental changes.

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Citations
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Journal ArticleDOI

The maternal-to-zygotic transition revisited.

TL;DR: Current understanding of the mechanisms that underlie handover of developmental control to the zygotic genome during the maternal-to-zygotic transition is reviewed.
Posted ContentDOI

Beyond accessibility: ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation

TL;DR: ToBIAS is presented, a comprehensive, accurate, and fast footprinting framework enabling genome-wide investigation of TF binding dynamics for hundreds of TFs simultaneously, and illustrated how to unveil complex TF dynamics during zygotic genome activation (ZGA) in both humans and mice.
Journal ArticleDOI

Brd4 and P300 Confer Transcriptional Competency during Zygotic Genome Activation.

TL;DR: It is concluded that P300 and Brd4 are sufficient to trigger genome-wide transcriptional competency by regulating histone acetylation on the first zygotic genes in zebrafish, which is critical for initiatingZygotic development and developmental reprogramming.
Journal ArticleDOI

Insights into epigenetic patterns in mammalian early embryos

TL;DR: The aim of this review is to highlight the most recent progress in understanding the mechanisms of epigenetic remodeling during early embryogenesis in mammals, including DNA methylation, histone modifications, chromatin accessibility and 3D chromatin organization.
References
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Journal ArticleDOI

RNA-Seq: a revolutionary tool for transcriptomics

TL;DR: The RNA-Seq approach to transcriptome profiling that uses deep-sequencing technologies provides a far more precise measurement of levels of transcripts and their isoforms than other methods.
Journal ArticleDOI

A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells

TL;DR: It is proposed that bivalent domains silence developmental genes in ES cells while keeping them poised for activation, highlighting the importance of DNA sequence in defining the initial epigenetic landscape and suggesting a novel chromatin-based mechanism for maintaining pluripotency.
Journal ArticleDOI

Regulation of chromatin by histone modifications

TL;DR: The known histone modifications are described, where they are found genomically and discussed and some of their functional consequences are discussed, concentrating mostly on transcription where the majority of characterisation has taken place.
Journal ArticleDOI

ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide

TL;DR: This method probes DNA accessibility with hyperactive Tn5 transposase, which inserts sequencing adapters into accessible regions of chromatin, which can be used to infer regions of increased accessibility, as well as to map regions of transcription‐factor binding and nucleosome position.
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What are the mechanisms by which cacoubie activation is regulated?

The paper does not provide information about the specific mechanisms by which zygotic genome activation is regulated.