scispace - formally typeset
Journal ArticleDOI

Next-generation proteomics: towards an integrative view of proteome dynamics

Reads0
Chats0
TLDR
MS-based proteomics is starting to mature and to deliver through a combination of developments in instrumentation, sample preparation and computational analysis, and to highlight recent applications.
Abstract
Next-generation sequencing allows the analysis of genomes, including those representing disease states. However, the causes of most disorders are multifactorial, and systems-level approaches, including the analysis of proteomes, are required for a more comprehensive understanding. The proteome is extremely multifaceted owing to splicing and protein modifications, and this is further amplified by the interconnectivity of proteins into complexes and signalling networks that are highly divergent in time and space. Proteome analysis heavily relies on mass spectrometry (MS). MS-based proteomics is starting to mature and to deliver through a combination of developments in instrumentation, sample preparation and computational analysis. Here we describe this emerging next generation of proteomics and highlight recent applications.

read more

Content maybe subject to copyright    Report

Citations
More filters
Posted ContentDOI

Time-dependent changes to sepsis-specific networks in the plasma proteome are mechanistic readouts of sepsis progression.

TL;DR: A time-dependent assessment of changes to the plasma proteome upon infection with Salmonella enterica serovar Typhimurium revealed a transition from early inflammation and coagulation to a later stage of chronic inflammation, coagulopathy and bacteremia.
Journal ArticleDOI

Systemic LRG1 Expression in Melanoma is Associated with Disease Progression and Recurrence

TL;DR: In this article , the response rates upon neoadjuvant immune checkpoint blockade (ICB) in stage III melanoma are higher as compared with stage IV disease, and the authors hypothesized that systemic immune suppression might be a mechanism responsible for lower response rates in late-stage disease and also potentially with disease recurrence in early stage disease.
Posted ContentDOI

Transcriptome Analysis of the Mouse Medial Prefrontal Cortex in Chronic Constriction Injury Model: Implications of neuropathic pain-induced cognitive impairment

TL;DR: In this paper , the authors examined changes in the transciptomic profiles in the medial prefrontal cortex (mPFC) of mice with chronic pain and cognitive impairment using RNA sequencing (RNA-seq) technology.
Journal ArticleDOI

OMICs approaches and technologies for understanding low-high feed efficiency traits in chicken: implication to breeding.

TL;DR: In this article , a review aimed to highlight the components of feed efficiency and general OMICs approaches and technologies, and the individual and multi-OMICs based understanding of chicken feed efficiency traits and the application of the acquired knowledge in the chicken breeding program were addressed.
References
More filters
Journal ArticleDOI

Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors.

TL;DR: Induction of pluripotent stem cells from mouse embryonic or adult fibroblasts by introducing four factors, Oct3/4, Sox2, c-Myc, and Klf4, under ES cell culture conditions is demonstrated and iPS cells, designated iPS, exhibit the morphology and growth properties of ES cells and express ES cell marker genes.
Journal ArticleDOI

Global quantification of mammalian gene expression control

TL;DR: Using a quantitative model, the first genome-scale prediction of synthesis rates of mRNAs and proteins is obtained and it is found that the cellular abundance of proteins is predominantly controlled at the level of translation.
Journal ArticleDOI

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

TL;DR: It is proposed that this "competing endogenous RNA" (ceRNA) activity forms a large-scale regulatory network across the transcriptome, greatly expanding the functional genetic information in the human genome and playing important roles in pathological conditions, such as cancer.
Journal ArticleDOI

Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche.

TL;DR: It is concluded that intestinal crypt–villus units are self-organizing structures, which can be built from a single stem cell in the absence of a non-epithelial cellular niche.
Journal ArticleDOI

Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions

TL;DR: A proteomic-scale analysis of protein acetylation suggests that it is an important biological regulatory mechanism and the regulatory scope of lysine acetylations is broad and comparable with that of other major posttranslational modifications.
Related Papers (5)