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PAM recognition by miniature CRISPR-Cas14 triggers programmable double-stranded DNA cleavage

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TLDR
It is demonstrated that a T-rich PAM sequence triggers Cas14 proteins to also cut double-stranded DNA generating staggered ends, paving the way for genome editing applications with Cas14s.
Abstract
Small and robust CRISPR-Cas nucleases are highly desirable for genome editing applications. Being guided by a RNA to cleave targets near a short sequence termed a protospacer adjacent motif (PAM), Cas9 and Cas12 offer unprecedented flexibility, however, smaller more compact versions would simplify delivery and extend application. Recently, a new class 2 system encoding a miniature (529 amino acids) effector, Cas14a1, has been shown to exclusively function as a PAM-independent single stranded DNA nuclease. Using biochemical methods, we show that a T-rich PAM sequence triggers Cas14 proteins to also cut double-stranded DNA generating staggered ends. Finally, we demonstrate the ability of Cas14a1 to target and cleave cellular human chromosomal DNA paving the way for genome editing applications with Cas14s.

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Citations
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Journal ArticleDOI

Recent advances in the CRISPR genome editing tool set.

TL;DR: Further improving the system’s DNA modification efficiency and the delivery of its components into cells, and finding ways to reduce off-target effects, will be required for CRISPR to realize its therapeutic potential.
Journal ArticleDOI

Genome Editing in Plants: Exploration of Technological Advancements and Challenges

TL;DR: In the present review, several CRISPR/Cas based approaches have been discussed, considering recent advances and challenges to implicate those in the crop improvement programs, and a catalog of available computational tools and servers facilitating designing of guide-RNA targets, construct designs, and data analysis is provided.
Journal ArticleDOI

Applications of CRISPR-Cas systems in lactic acid bacteria

TL;DR: CRISPR-Cas classification, overview CRISPR biology and mechanism of action, and current and future applications in lactic acid bacteria are discussed, opening new avenues for their industrial exploitation and manipulation of microbiomes.
Journal ArticleDOI

CRISPR/Cas9: Nature's gift to prokaryotes and an auspicious tool in genome editing.

TL;DR: The basic mechanisms underlying CRISPR/Cas9 working principles are explored along with some of its current applications in a number of diverse fields.
References
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Journal ArticleDOI

A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.

TL;DR: This study reveals a family of endonucleases that use dual-RNAs for site-specific DNA cleavage and highlights the potential to exploit the system for RNA-programmable genome editing.
Journal ArticleDOI

Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system.

TL;DR: In this paper, the authors characterized Cpf1, a putative class 2 CRISPR effector, which is a single RNA-guided endonuclease lacking tracrRNA and utilizes a T-rich protospacer-adjacent motif.
Journal ArticleDOI

Cas9–crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria

TL;DR: It is demonstrated that the Cas9–crRNA complex of the Streptococcus thermophilus CRISPR3/Cas system introduces in vitro a double-strand break at a specific site in DNA containing a sequence complementary to crRNA, paving the way for engineering of universal programmable RNA-guided DNA endonucleases.
Journal ArticleDOI

CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity

TL;DR: It is shown that RNA-guided DNA binding unleashes indiscriminate single-stranded DNA cleavage activity by Cas12a that completely degrades ssDNA molecules, which is also a property of other type V CRISPR-Cas12 enzymes.
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