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Phosphoregulation of the autophagy machinery by kinases and phosphatases.

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TLDR
In this paper, the authors summarize the current knowledge on kinases and phosphatases acting on the core autophagy machinery and discuss the relevance of phosphoregulation for the overall process of autophagocytosis.
Abstract
Eukaryotic cells use post-translational modifications to diversify and dynamically coordinate the function and properties of protein networks within various cellular processes. For example, the process of autophagy strongly depends on the balanced action of kinases and phosphatases. Highly conserved from the budding yeast Saccharomyces cerevisiae to humans, autophagy is a tightly regulated self-degradation process that is crucial for survival, stress adaptation, maintenance of cellular and organismal homeostasis, and cell differentiation and development. Many studies have emphasized the importance of kinases and phosphatases in the regulation of autophagy and identified many of the core autophagy proteins as their direct targets. In this review, we summarize the current knowledge on kinases and phosphatases acting on the core autophagy machinery and discuss the relevance of phosphoregulation for the overall process of autophagy.

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ER-phagy: mechanisms, regulation, and diseases connected to the lysosomal clearance of the endoplasmic reticulum

TL;DR: ER-phagy is dysfunctional in specific human diseases and its regulators are subverted by pathogens, highlighting its crucial role for cell and organism life.
Journal ArticleDOI

Molecular regulation of autophagosome formation

TL;DR: The current knowledge about the molecular regulation of autophagosome formation is described, with a particular focus on budding yeast and mammalian cells.
Journal ArticleDOI

Molecular regulation of autophagosome formation

TL;DR: A review of the current knowledge about the molecular regulation of autophagosome formation, with a particular focus on budding yeast and mammalian cells, can be found in this article , where the authors describe the current state-of-the-art in autophagy.
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The AMPK pathway in fatty liver disease

TL;DR: A detailed description of each signaling axis of the AMPK pathway, as well as a discussion of its mechanism of action and therapeutic significance, is performed in this review.
Journal ArticleDOI

Post-Translational Modifications of ATG4B in the Regulation of Autophagy

Na Yeon Park, +2 more
- 01 Apr 2022 - 
TL;DR: Recent advances in understanding of the effect of post-translational modification on the regulation, activity, and function of ATG4, the main protease that controls autophagy are reviewed.
References
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Journal ArticleDOI

Autophagosomal YKT6 is required for fusion with lysosomes independently of syntaxin 17.

TL;DR: It is found that autophagosome–lysosome fusion is retained to some extent even in STX17 knockout (KO) HeLa cells, and the findings suggest that two independent SNARE complexes mediate autophagic fusion.
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Sac phosphatase domain proteins

TL;DR: This review describes the Sac phosphatase domain-containing proteins and their actions, with particular reference to the genetic and biochemical insights provided by study of the yeast Saccharomyces cerevisiae.
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The Intrinsically Disordered Protein Atg13 Mediates Supramolecular Assembly of Autophagy Initiation Complexes

TL;DR: It is demonstrated that Atg13 has a large intrinsically disordered region (IDR) and interacts with two distinct Atg17 molecules using two binding regions in the IDR, and is essential not only for Atg1 complex assembly in vitro, but also for PAS organization in vivo.
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The Structure of the Cell Cycle Protein Cdc14 Reveals a Proline-Directed Protein Phosphatase

TL;DR: Structural and kinetic data support a role for Cdc14 in the preferential dephosphorylation of proteins modified by proline‐directed kinases.
Journal ArticleDOI

AMPK regulates autophagy by phosphorylating BECN1 at threonine 388

TL;DR: It is shown that AMP-activated protein kinase (AMPK) regulates autophagy by phosphorylating BECN1 at Thr388, uncovering a novel mechanism of Autophagy regulation.
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