B
Brian Smith-White
Researcher at National Institutes of Health
Publications - 6
Citations - 4736
Brian Smith-White is an academic researcher from National Institutes of Health. The author has contributed to research in topics: Genome & Genome project. The author has an hindex of 5, co-authored 5 publications receiving 3475 citations.
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Journal ArticleDOI
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary,Mathew W. Wright,J. Rodney Brister,Stacy Ciufo,Diana Haddad,Richard McVeigh,Bhanu Rajput,Barbara Robbertse,Brian Smith-White,Danso Ako-adjei,Alexander Astashyn,Azat Badretdin,Yiming Bao,Olga Blinkova,Vyacheslav Brover,Vyacheslav Chetvernin,Jinna Choi,Eric Cox,Olga Ermolaeva,Catherine M. Farrell,Tamara Goldfarb,Tripti Gupta,Daniel H. Haft,Eneida L. Hatcher,Wratko Hlavina,Vinita Joardar,Vamsi K. Kodali,Wenjun Li,Donna Maglott,Patrick Masterson,Kelly M. McGarvey,Michael R. Murphy,Kathleen O'Neill,Shashikant Pujar,Sanjida H. Rangwala,Daniel Rausch,Lillian D. Riddick,Conrad L. Schoch,Andrei Shkeda,Susan S. Storz,Hanzhen Sun,Françoise Thibaud-Nissen,Igor Tolstoy,Raymond E. Tully,Anjana R. Vatsan,Craig Wallin,David Webb,Wendy Wu,Melissa J. Landrum,Avi Kimchi,Tatiana Tatusova,Michael DiCuccio,Paul Kitts,Terence Murphy,Kim D. Pruitt +54 more
TL;DR: The approach to utilizing available RNA-Seq and other data types in the authors' manual curation process for vertebrate, plant, and other species is summarized, and a new direction for prokaryotic genomes and protein name management is described.
Journal ArticleDOI
The Rice Annotation Project Database (RAP-DB): 2008 update
Tsuyoshi Tanaka,Baltazar A. Antonio,Shoshi Kikuchi,Takashi Matsumoto,Yoshiaki Nagamura,Hisataka Numa,Hiroaki Sakai,Jianzhong Wu,Takeshi Itoh,Takeshi Itoh,Takuji Sasaki,Ryo Aono,Yasuyuki Fujii,Takuya Habara,Erimi Harada,Masako Kanno,Yoshihiro Kawahara,Hiroaki Kawashima,Hiromi Kubooka,Akihiro Matsuya,Hajime Nakaoka,Naomi Saichi,Ryoko Sanbonmatsu,Yoshiharu Sato,Yuji Shinso,Mami Suzuki,Jun-ichi Takeda,Motohiko Tanino,Fusano Todokoro,Kaori Yamaguchi,Naoyuki Yamamoto,Chisato Yamasaki,Tadashi Imanishi,Toshihisa Okido,Masahito Tada,Kazuho Ikeo,Yoshio Tateno,Takashi Gojobori,Yao-Cheng Lin,Fu Jin Wei,Yue-Ie C. Hsing,Qiang Zhao,Bin Han,Melissa Kramer,Richard W. McCombie,David Lonsdale,Claire O'Donovan,Eleanor J. Whitfield,Rolf Apweiler,Kanako O. Koyanagi,Jitendra P. Khurana,Saurabh Raghuvanshi,Nagendra K. Singh,Akhilesh K. Tyagi,Georg Haberer,Masaki Fujisawa,Satomi Hosokawa,Yukiyo Ito,Hiroshi Ikawa,Michie Shibata,Mayu Yamamoto,Richard Bruskiewich,Douglas R. Hoen,Thomas E. Bureau,Nobukazu Namiki,Hajime Ohyanagi,Yasumichi Sakai,Satoshi Nobushima,Katsumi Sakata,Roberto A. Barrero,Yutaka Sato,Alexandre Souvorov,Brian Smith-White,Tatiana Tatusova,Suyoung An,Gynheung An,Satoshi Oota,Galina Fuks,Joachim Messing,Karen R. Christie,Damien Lieberherr,Hyeran Kim,Andrea Zuccolo,Rod A. Wing,Kan Nobuta,Pamela J. Green,Cheng Lu,Blake C. Meyers,Cristian Chaparro,Benoît Piégu,Olivier Panaud,Manuel Echeverria +91 more
TL;DR: The latest version of the RAP-DB contains a variety of annotation data as follows: clone positions, structures and functions of 31 439 genes validated by cDNAs, RNA genes detected by massively parallel signature sequencing (MPSS) technology and sequence similarity, flanking sequences of mutant lines, transposable elements, etc.
Journal ArticleDOI
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
Takeshi Itoh,Takeshi Itoh,Tsuyoshi Tanaka,Roberto A. Barrero,Chisato Yamasaki,Yasuyuki Fujii,Phillip Hilton,Baltazar A. Antonio,Hideo Aono,Rolf Apweiler,Richard Bruskiewich,Thomas E. Bureau,Frances A. Burr,Antonio Costa de Oliveira,Galina Fuks,Takuya Habara,Georg Haberer,Bin Han,Erimi Harada,Aiko T. Hiraki,Hirohiko Hirochika,Douglas R. Hoen,Hiroki Hokari,Satomi Hosokawa,Yue-Ie C. Hsing,Hiroshi Ikawa,Kazuho Ikeo,Tadashi Imanishi,Tadashi Imanishi,Yukiyo Ito,Pankaj Jaiswal,Masako Kanno,Yoshihiro Kawahara,Yoshihiro Kawahara,Toshiyuki Kawamura,Hiroaki Kawashima,Jitendra P. Khurana,Shoshi Kikuchi,Setsuko Komatsu,Kanako O. Koyanagi,Hiromi Kubooka,Damien Lieberherr,Yao-Cheng Lin,David M. Lonsdale,Takashi Matsumoto,Akihiro Matsuya,W. Richard McCombie,Joachim Messing,Akio Miyao,Nicola Mulder,Yoshiaki Nagamura,Jongmin Nam,Jongmin Nam,Nobukazu Namiki,Hisataka Numa,Shin Nurimoto,Claire O'Donovan,Hajime Ohyanagi,Toshihisa Okido,Satoshi Oota,Naoki Osato,Lance E. Palmer,Lance E. Palmer,Francis Quetier,Saurabh Raghuvanshi,Naomi Saichi,Hiroaki Sakai,Hiroaki Sakai,Yasumichi Sakai,Katsumi Sakata,Tetsuya Sakurai,Fumihiko Sato,Yoshiharu Sato,Heiko Schoof,Heiko Schoof,Motoaki Seki,Michie Shibata,Yuji Shimizu,Kazuo Shinozaki,Yuji Shinso,Nagendra K. Singh,Brian Smith-White,Jun-ichi Takeda,Motohiko Tanino,Tatiana Tatusova,Supat Thongjuea,Fusano Todokoro,Mika Tsugane,Akhilesh K. Tyagi,Apichart Vanavichit,Aihui Wang,Rod A. Wing,Kaori Yamaguchi,Mayu Yamamoto,Naoyuki Yamamoto,Yeisoo Yu,Hao Zhang,Qiang Zhao,Kenichi Higo,Benjamin Burr,Takashi Gojobori,Takuji Sasaki +101 more
TL;DR: The results suggest that natural selection may have played a role for duplicated genes in both species, so that duplication was suppressed or favored in a manner that depended on the function of a gene.
Journal ArticleDOI
Plant Genome Resources at the National Center for Biotechnology Information
David L. Wheeler,Brian Smith-White,Vyacheslav Chetvernin,Sergei Resenchuk,Susan M. Dombrowski,Steven W. Pechous,Tatiana Tatusova,James Ostell +7 more
TL;DR: The National Center for Biotechnology Information (NCBI) integrates data from more than 20 biological databases through a flexible search and retrieval system called Entrez, which makes Entrez a powerful system for genomic research.
Book ChapterDOI
A collection of plant-specific genomic data and resources at NCBI.
TL;DR: The National Center for Biotechnology Information provides a data-rich environment in support of genomic research by collecting the biological data for genomes, genes, gene expressions, gene variation, gene families, proteins, and protein domains and integrating the data with analytical, search, and retrieval resources through the NCBI Web site.