J
Jeremy D. DeBarry
Researcher at University of Georgia
Publications - 29
Citations - 5545
Jeremy D. DeBarry is an academic researcher from University of Georgia. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 17, co-authored 27 publications receiving 3486 citations. Previous affiliations of Jeremy D. DeBarry include Plant Genome Mapping Laboratory & Yerkes National Primate Research Center.
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Journal ArticleDOI
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yupeng Wang,Haibao Tang,Jeremy D. DeBarry,Xu-fei Tan,Jingping Li,Xiyin Wang,Tae-Ho Lee,Huizhe Jin,Barry S. Marler,Hui Guo,Jessica C. Kissinger,Andrew H. Paterson +11 more
TL;DR: The MCScanX toolkit implements an adjusted MCScan algorithm for detection of synteny and collinearity that extends the original software by incorporating 14 utility programs for visualization of results and additional downstream analyses.
Journal ArticleDOI
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
Jo Ann Banks,Tomoaki Nishiyama,Mitsuyasu Hasebe,Mitsuyasu Hasebe,John L. Bowman,John L. Bowman,Michael Gribskov,Claude W. dePamphilis,Victor A. Albert,Naoki Aono,Tsuyoshi Aoyama,Tsuyoshi Aoyama,Barbara A. Ambrose,Neil W. Ashton,Michael J. Axtell,Elizabeth I. Barker,Michael S. Barker,Jeffrey L. Bennetzen,Nicholas D. Bonawitz,Clint Chapple,Chaoyang Cheng,Luiz Gustavo Guedes Corrêa,Michael Dacre,Jeremy D. DeBarry,Ingo Dreyer,Marek Eliáš,Eric M. Engstrom,Mark Estelle,Liang Feng,Cédric Finet,Sandra K. Floyd,Wolf B. Frommer,Tomomichi Fujita,Lydia Gramzow,Michael Gutensohn,Michael Gutensohn,Jesper Harholt,Mitsuru Hattori,Mitsuru Hattori,Alexander Heyl,Tadayoshi Hirai,Yuji Hiwatashi,Yuji Hiwatashi,Masaki Ishikawa,Mineko Iwata,Kenneth G. Karol,Barbara Koehler,Uener Kolukisaoglu,Uener Kolukisaoglu,Minoru Kubo,Tetsuya Kurata,Sylvie Lalonde,Kejie Li,Ying Li,Ying Li,Amy Litt,Eric Lyons,Gerard Manning,Takeshi Maruyama,Todd P. Michael,Koji Mikami,Saori Miyazaki,Saori Miyazaki,Shin-Ichi Morinaga,Shin-Ichi Morinaga,TakashiMurata,TakashiMurata,Bernd Mueller-Roeber,David R. Nelson,Mari Obara,Yasuko Oguri,Richard G. Olmstead,Naoko T. Onodera,Bent O. Petersen,Birgit Pils,Michael J. Prigge,Stefan A. Rensing,Diego Mauricio Riaño-Pachón,Diego Mauricio Riaño-Pachón,Alison W. Roberts,Yoshikatsu Sato,Henrik Vibe Scheller,Henrik Vibe Scheller,Burkhard Schulz,Christian Schulz,Eugene V. Shakirov,Nakako Shibagaki,Naoki Shinohara,Dorothy E. Shippen,Iben Sørensen,Iben Sørensen,Ryo Sotooka,Nagisa Sugimoto,Mamoru Sugita,Naomi Sumikawa,Milos Tanurdzic,Günter Theißen,Peter Ulvskov,Sachiko Wakazuki,Jing-Ke Weng,Jing-Ke Weng,William G.T. Willats,Daniel Wipf,Paul G. Wolf,Lixing Yang,Andreas Zimmer,Qihui Zhu,Therese Mitros,Uffe Hellsten,Dominique Loqué,Robert Otillar,Asaf Salamov,Jeremy Schmutz,Harris Shapiro,Erika Lindquist,Susan Lucas,Daniel S. Rokhsar,Daniel S. Rokhsar,Igor V. Grigoriev +118 more
TL;DR: The genome sequence of the lycophyte Selaginella moellendorffii (Selaginella), the first nonseed vascular plant genome reported, is reported, finding that the transition from a gametophytes- to a sporophyte-dominated life cycle required far fewer new genes than the Transition from a non Seed vascular to a flowering plant.
Journal ArticleDOI
De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)
Eman K. Al-Dous,Binu George,Maryam E. Al-Mahmoud,Moneera Al-Jaber,Hao Wang,Yasmeen Salameh,Eman K. Al-Azwani,Srinivasa R. Chaluvadi,Ana Clara Pontaroli,Jeremy D. DeBarry,Vincent Arondel,John B. Ohlrogge,Imad J Saie,Khaled M Suliman-Elmeer,Jeffrey L. Bennetzen,Robert R Kruegger,Joel A. Malek +16 more
TL;DR: A region of the genome linked to gender is identified and evidence that date palm employs an XY system of gender inheritance is found, the first publicly available resource of its type for a member of the order Arecales.
Journal ArticleDOI
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center.
Beatrice Amos,Cristina Aurrecoechea,Matthieu Barba,Ana Barreto,Evelina Y. Basenko,Wojciech Bażant,Robert Belnap,Ann Sizemore Blevins,Ulrike Böhme,John Brestelli,Brian P. Brunk,Mark X. Caddick,Danielle Callan,Lahcen I. Campbell,Mikkel B. Christensen,George K. Christophides,Kathryn Crouch,Kristina Davis,Jeremy D. DeBarry,Ryan Doherty,Yikun Duan,Michael J. Dunn,Dave Falke,Steve Fisher,Paul Flicek,Brett Fox,Bindu Gajria,Gloria I. Giraldo-Calderón,Gloria I. Giraldo-Calderón,Omar S. Harb,Elizabeth Harper,Christiane Hertz-Fowler,Mark J Hickman,Connor Howington,Sufen Hu,Jay C. Humphrey,John Iodice,Andrew M. Jones,John Judkins,Sarah A. Kelly,Jessica C. Kissinger,Dae Kun Kwon,Kristopher Lamoureux,Daniel Lawson,Wei Li,Kallie Lies,Disha Lodha,Jamie Long,Robert M. MacCallum,Gareth Maslen,Mary Ann McDowell,Jaroslaw Nabrzyski,David S. Roos,Samuel S. C. Rund,Stephanie Wever Schulman,Achchuthan Shanmugasundram,Vasily Sitnik,Drew Spruill,David Starns,Christian J. Stoeckert,Sheena Shah Tomko,Haiming Wang,Susanne Warrenfeltz,Robert Wieck,Paul A Wilkinson,Lin Xu,Jie Zheng +66 more
TL;DR: The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB, https://veupathdb.org) represents the 2019 merger of VectorBase with the EuPath database as mentioned in this paper.
Journal ArticleDOI
Theileria parasites secrete a prolyl isomerase to maintain host leukocyte transformation
Justine Marsolier,Martine Perichon,Jeremy D. DeBarry,Bruno O. Villoutreix,Johanna Chluba,Tatiana Lopez,Carmen Garrido,Xiao Zhen Zhou,Kun Ping Lu,Lauriane Fritsch,Slimane Ait-Si-Ali,M. Mhadhbi,Souhila Medjkane,Jonathan B. Weitzman +13 more
TL;DR: It is shown that TaPIN1 is a bona fide prolyl isomerase and that it interacts with the host ubiquitin ligase FBW7, leading to its degradation and subsequent stabilization of c-JUN, which promotes transformation.