J
Jérôme Collemare
Researcher at Utrecht University
Publications - 59
Citations - 4804
Jérôme Collemare is an academic researcher from Utrecht University. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 24, co-authored 50 publications receiving 3665 citations. Previous affiliations of Jérôme Collemare include Institut national de la recherche agronomique & Wageningen University and Research Centre.
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Journal ArticleDOI
Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea
Joelle Amselem,Christina A. Cuomo,Jan A. L. van Kan,Muriel Viaud,Ernesto P. Benito,Arnaud Couloux,Pedro M. Coutinho,Ronald P. de Vries,Paul S. Dyer,Sabine Fillinger,Elisabeth Fournier,Elisabeth Fournier,Lilian Gout,Matthias Hahn,Linda M. Kohn,Nicolas Lapalu,Kim M. Plummer,Jean-Marc Pradier,Emmanuel Quévillon,Emmanuel Quévillon,Amir Sharon,Adeline Simon,Arjen ten Have,Bettina Tudzynski,Paul Tudzynski,Patrick Wincker,Marion Andrew,Véronique Anthouard,Ross E. Beever,Rolland Beffa,Isabelle Benoit,Ourdia Bouzid,Baptiste Brault,Zehua Chen,Mathias Choquer,Mathias Choquer,Jérôme Collemare,Jérôme Collemare,Pascale Cotton,Etienne Danchin,Corinne Da Silva,Angélique Gautier,Corinne Giraud,Tatiana Giraud,Celedonio González,Sandrine Grossetete,Ulrich Güldener,Bernard Henrissat,Barbara J. Howlett,Chinnappa D. Kodira,Matthias Kretschmer,Anne Lappartient,Michaela Leroch,Caroline Levis,Evan Mauceli,Cécile Neuvéglise,Birgitt Oeser,Matthew D. Pearson,Julie Poulain,Nathalie Poussereau,Hadi Quesneville,Christine Rascle,Julia Schumacher,Béatrice Segurens,Adrienne Sexton,Evelyn Silva,Catherine Sirven,Darren M. Soanes,Nicholas J. Talbot,Matthew D. Templeton,Chandri Yandava,Oded Yarden,Qiandong Zeng,Jeffrey A. Rollins,Marc-Henri Lebrun,Marc-Henri Lebrun,Marty Dickman +76 more
TL;DR: Comparative genome analysis revealed the basis of differing sexual mating compatibility systems between S. sclerotiorum and B. cinerea, and shed light on the evolutionary and mechanistic bases of the genetically complex traits of necrotrophic pathogenicity and sexual mating.
Journal ArticleDOI
Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism
Pietro Spanu,James Abbott,Joelle Amselem,Timothy A. Burgis,Darren M. Soanes,Kurt Stüber,Emiel Ver Loren van Themaat,James K. M. Brown,Sarah Butcher,Sarah J. Gurr,Marc-Henri Lebrun,Christopher J. Ridout,Paul Schulze-Lefert,Nicholas J. Talbot,Nahal Ahmadinejad,Christian Ametz,Geraint Barton,Mariam Benjdia,Przemyslaw Bidzinski,Laurence V. Bindschedler,Maike Both,Marin Talbot Brewer,Lance Cadle-Davidson,Lance Cadle-Davidson,Molly Cadle-Davidson,Jérôme Collemare,Rainer Cramer,Omer Frenkel,Dale Godfrey,James Harriman,Claire Hoede,Brian C. King,Sven Klages,Jochen Kleemann,Daniela Knoll,Prasanna Koti,Jonathan Kreplak,Francisco J. Lopez-Ruiz,Xunli Lu,Takaki Maekawa,Siraprapa Mahanil,Cristina Micali,Michael G. Milgroom,Giovanni Montana,Sandra Noir,Richard J. O'Connell,Simone Oberhaensli,Francis Parlange,Carsten Pedersen,Hadi Quesneville,Richard Reinhardt,Matthias Rott,Soledad Sacristán,Sarah M. Schmidt,Moritz Schön,Pari Skamnioti,Hans Sommer,Amber E. Stephens,Hiroyuki Takahara,Hans Thordal-Christensen,Marielle Vigouroux,Ralf Weßling,Thomas Wicker,Ralph Panstruga +63 more
TL;DR: A group of papers analyzes pathogen genomes to find the roots of virulence, opportunism, and life-style determinants in plant pathogens, suggesting that most effectors represent species-specific adaptations.
Journal ArticleDOI
MIBiG 2.0: a repository for biosynthetic gene clusters of known function.
Satria A. Kautsar,Kai Blin,Simon Shaw,Jorge C. Navarro-Muñoz,Barbara R. Terlouw,Justin J. J. van der Hooft,Jeffrey A. van Santen,Vittorio Tracanna,Hernando G. Suarez Duran,Victòria Pascal Andreu,Nelly Selem-Mojica,Mohammad Alanjary,Serina L. Robinson,George Lund,Samuel C. Epstein,Ashley C. Sisto,Louise K. Charkoudian,Jérôme Collemare,Roger G. Linington,Tilmann Weber,Marnix H. Medema +20 more
TL;DR: MIBiG 2.0 is presented, which encompasses major updates to the schema, the data, and the online repository itself, and improves the user experience by adding new features such as query searches and a statistics page, and enabled direct link-outs to chemical structure databases.
Journal ArticleDOI
The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
Pierre J. G. M. de Wit,Ate van der Burgt,Bilal Ökmen,Ioannis Stergiopoulos,Ioannis Stergiopoulos,Kamel A. Abd-Elsalam,Andrea Aerts,Ali H. Bahkali,Henriek G. Beenen,Pranav Chettri,Murray P. Cox,Erwin Datema,Ronald P. de Vries,Braham Dhillon,Austen R. D. Ganley,Scott A. Griffiths,Yanan Guo,Richard C. Hamelin,Bernard Henrissat,M. Shahjahan Kabir,Mansoor Karimi Jashni,Mansoor Karimi Jashni,Gert H. J. Kema,Sylvia Klaubauf,Alla Lapidus,Alla Lapidus,Anthony Levasseur,Erika Lindquist,Rahim Mehrabi,Robin A. Ohm,Timothy J. Owen,Timothy J. Owen,Asaf Salamov,Arne Schwelm,Arne Schwelm,Elio Schijlen,Hui Sun,Harrold A. van den Burg,Harrold A. van den Burg,Roeland C. H. J. van Ham,Shuguang Zhang,Shuguang Zhang,Stephen B. Goodwin,Igor V. Grigoriev,Jérôme Collemare,Rosie E. Bradshaw +45 more
TL;DR: Comparison of the genomes of the Dothideomycete fungal plant pathogens suggests that these closely related plant pathogens had a common ancestral host but since adapted to different hosts and lifestyles by a combination of differentiated gene content, pseudogenization, and gene regulation.
Journal ArticleDOI
Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi
TL;DR: Gene-by-gene phylogenetic analysis showed that in C. globosum and M. grisea, the evolution of these ACE1-like clusters is characterized by successive complex duplication events including tandem duplication within the M.Grisea cluster, and phylogenetic trees present evidence that at least five of the six genes in the homologous ACE1 gene cluster in A. clavatus originated by horizontal transfer from a donor closely related to M.grisea.