K
Katrine Whiteson
Researcher at University of California, Irvine
Publications - 98
Citations - 4891
Katrine Whiteson is an academic researcher from University of California, Irvine. The author has contributed to research in topics: Microbiome & Medicine. The author has an hindex of 25, co-authored 76 publications receiving 3673 citations. Previous affiliations of Katrine Whiteson include Geneva College & University of Geneva.
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Journal ArticleDOI
Mechanisms of Site-Specific Recombination*
TL;DR: Details of the site-specific recombination processes have been revealed by recent structural and biochemical studies of members of both families, named after the amino acid residue that forms a covalent protein-DNA linkage in the reaction intermediate.
Journal ArticleDOI
Bacteriophage adhering to mucus provide a non-host-derived immunity.
Jeremy J. Barr,Rita Auro,Mike Furlan,Katrine Whiteson,Marcella L. Erb,Joe Pogliano,Aleksandr Stotland,Roland Wolkowicz,Andrew S. Cutting,Kelly S. Doran,Peter Salamon,Merry Youle,Forest Rohwer +12 more
TL;DR: It is shown that phage-to-bacteria ratios were increased, relative to the adjacent environment, on all mucosal surfaces sampled, ranging from cnidarians to humans, and that this increase in phage abundance is mucus dependent and protects the underlying epithelium from bacterial infection.
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Going viral: next-generation sequencing applied to phage populations in the human gut.
TL;DR: How work characterizing phage diversity and lifestyles in the human gut is changing the authors' view of ourselves as supra-organisms is explored and how a renewed appreciation of phage dynamics may yield new applications for phage therapies designed to manipulate the structure and functions of their gut microbiomes is discussed.
Journal ArticleDOI
Minimum information about an uncultivated virus genome (MIUVIG)
Simon Roux,Evelien M. Adriaenssens,Bas E. Dutilh,Eugene V. Koonin,Andrew M. Kropinski,Mart Krupovic,Jens H. Kuhn,Rob Lavigne,J. Rodney Brister,Arvind Varsani,Arvind Varsani,Clara Amid,Ramy K. Aziz,Seth R. Bordenstein,Peer Bork,Mya Breitbart,Guy Cochrane,Rebecca A. Daly,Christelle Desnues,Melissa B. Duhaime,Joanne B. Emerson,François Enault,Jed A. Fuhrman,Pascal Hingamp,Philip Hugenholtz,Bonnie L. Hurwitz,Natalia Ivanova,Jessica M. Labonté,Kyung Bum Lee,Rex R. Malmstrom,Manuel Martinez-Garcia,Ilene Karsch Mizrachi,Hiroyuki Ogata,David Paez-Espino,Marie-Agnès Petit,Catherine Putonti,Thomas Rattei,Alejandro Reyes,Francisco Rodriguez-Valera,Karyna Rosario,Lynn M. Schriml,Frederik Schulz,Grieg F. Steward,Matthew B. Sullivan,Shinichi Sunagawa,Curtis A. Suttle,Ben Temperton,Susannah G. Tringe,Rebecca Vega Thurber,Nicole S. Webster,Nicole S. Webster,Katrine Whiteson,Steven W. Wilhelm,K. Eric Wommack,Tanja Woyke,Kelly C. Wrighton,Pelin Yilmaz,Takashi Yoshida,Mark J. Young,Natalya Yutin,Lisa Zeigler Allen,Lisa Zeigler Allen,Nikos C. Kyrpides,Emiley A. Eloe-Fadrosh +63 more
TL;DR: The MIUViG (Minimum Information about an Uncultivated Virus Genome) as mentioned in this paper standard was developed within the Genomic Standards Consortium framework and includes virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction.
Journal ArticleDOI
Metagenomic study of the oral microbiota by Illumina high-throughput sequencing
Vladimir Lazarevic,Katrine Whiteson,Susan M. Huse,David Hernandez,Laurent Farinelli,Magne Osteras,Jacques Schrenzel,Patrice Francois +7 more
TL;DR: The V5 hypervariable region of the 16S ribosomal RNA (rRNA) gene is identified as a short region providing reliable identification of bacterial sequences available in public databases such as the Human Oral Microbiome Database, and several taxa not yet discovered in these types of samples are identified.