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Kristin G. Ardlie
Researcher at Broad Institute
Publications - 165
Citations - 90852
Kristin G. Ardlie is an academic researcher from Broad Institute. The author has contributed to research in topics: Genome-wide association study & Single-nucleotide polymorphism. The author has an hindex of 74, co-authored 142 publications receiving 76019 citations. Previous affiliations of Kristin G. Ardlie include Massachusetts Institute of Technology & Buck Institute for Research on Aging.
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Journal ArticleDOI
Response to Comments on "A Common Genetic Variant Is Associated with Adult and Childhood Obesity"
Alan Herbert,Norman P. Gerry,Matthew B. McQueen,I. M. Heid,Arne Pfeufer,Thomas Illig,H.-Erich Wichmann,H.-Erich Wichmann,Thomas Meitinger,David G. Hunter,David G. Hunter,Frank B. Hu,Frank B. Hu,Graham A. Colditz,Anke Hinney,Johannes Hebebrand,Kerstin Koberwitz,Xiaofeng Zhu,Richard S. Cooper,Kristin G. Ardlie,Helen N. Lyon,Helen N. Lyon,Helen N. Lyon,Joel N. Hirschhorn,Joel N. Hirschhorn,Joel N. Hirschhorn,Nan M. Laird,Marc E. Lenburg,Christoph Lange,Christoph Lange,Michael F. Christman +30 more
TL;DR: Given the findings of a positive association between rs7566605 and body mass index in four out of five separate samples, a false positive finding cannot be ruled out with certainty but seems unlikely.
Posted ContentDOI
Mechanisms of tissue-specific genetic regulation revealed by latent factors across eQTLs
Yuan He,Surya B. Chhetri,Marios Arvanitis,Kaushik Srinivasan,François Aguet,Kristin G. Ardlie,Alvaro N. Barbeira,Rodrigo Bonazzola,Hae Kyung Im,Christopher D. Brown,Alexis Battle +10 more
TL;DR: A constrained matrix factorization model is developed to learn patterns of tissue sharing and tissue specificity of eQTLs across 49 human tissues from the Genotype-Tissue Expression (GTEx) project and exhibits better biological interpretability than heuristic methods.
Journal ArticleDOI
Clonal haematopoiesis and risk of chronic liver disease
Waihay J. Wong,Connor A. Emdin,Alexander G. Bick,Seyedeh M. Zekavat,Abhishek Niroula,James P. Pirruccello,Laura E. Dichtel,Gabriel K. Griffin,Mesbah Uddin,Christopher J. Gibson,Veronica Kovalcik,Amy E. Lin,Marie McConkey,Amelie Vromman,Rob S. Sellar,Peter G Kim,Mridul Agrawal,Joshua S. Weinstock,Michelle T. Long,Bing Yu,Rajarshi Banerjee,Rowan C. Nicholls,Andrea Dennis,Matt Kelly,Po-ru Loh,Steven A. McCarroll,Eric Boerwinkle,Ramachandran S. Vasan,Siddhartha Jaiswal,Andrew Johnson,Raymond T. Chung,Kathleen E. Corey,Daniel Levy,Christie M. Ballantyne,Namiko Abe,Gonçalo R. Abecasis,François Aguet,Christine A Albert,Laura Almasy,Álvaro Alonso,Seth A. Ament,Peter Anderson,Pramod Anugu,Deborah Applebaum-Bowden,Kristin G. Ardlie,Dan E. Arking,Donna K. Arnett,Allison E. Ashley-Koch,Stella Aslibekyan,Tim Assimes,Paul L. Auer,Dimitrios Avramopoulos,Najib T. Ayas,Adithya Balasubramanian,J. Barnard,Kathleen C. Barnes,Ronald G. Barr,Emily Barron-Casella,Lucas Barwick,Terri H. Beaty,Gerald Beck,Diane M. Becker,Lewis C. Becker,Rebecca L. Beer,Amber L. Beitelshees,Emelia J. Benjamin,Takis Benos,Marcos Bezerra,Lawrence F. Bielak,Joshua A Bis,Thomas W. Blackwell,John Blangero,Nathan M Blue,Donald W. Bowden,Russell P. Bowler,Jennifer A. Brody,Ulrich Broeckel,Jai G. Broome,Deborah L. Brown,Karen L. Bunting,Esteban G. Burchard,Carlos Bustamante,Erin J Buth,Brian E. Cade,Jonathan Cardwell,Vincent J. Carey,Julie Carrier,April P Carson,Cara L. Carty,Richard Casaburi,J. P. Casas Romero,James M. Casella,Peter J. Castaldi,Mark Chaffin,Christy Y. P. Chang,Yi-Cheng Chang,Daniel I. Chasman,Sameer Chavan,Bo Chen,Wei-Min Chen,Yii-Der Ida Chen,Mi Ae Cho,Seung Hoan Choi,Lee-Ming Chuang,M Chung,Ren-Hua Chung,C. Clish,Suzy C. Comhair,Matthew P. Conomos,Elaine Cornell,Adolfo Correa,Carolyn J. Crandall,J. A. Crapo,L. Adrienne Cupples,Joanne E. Curran,Jeffrey R. Curtis,Brian Custer,Coleen M. Damcott,Dawood Darbar,Sean David,Colleen P. Davis,Michelle Daya,Mariza de Andrade,L. de las Fuentes,Paul S. de Vries,Michael DeBaun,Ranjan Deka,Dawn L. DeMeo,Scott Devine,Huyen Dinh,Harshavardhan Doddapaneni,Qing Duan,Shannon Dugan-Perez,Ravindranath Duggirala,J. Peter Durda,Susan K. Dutcher,Charles B. Eaton,Lynette Ekunwe,A. El Boueiz,Patrick T. Ellinor,Leslie S. Emery,Serpil C. Erzurum,Charles D. Farber,Jesse Farek,Tasha E. Fingerlin,Matthew Flickinger,Myriam Fornage,Nora Franceschini,Christian D. Frazar,Mao Fu,Stephanie M. Fullerton,Lucinda Fulton,Stacey Gabriel,Weiniu Gan,Shanshan Gao,Yan Gao,Margery Gass,Heather Geiger,Bruce Gelb,M. Geraci,Soren Germer,Robert E. Gerszten,Auyon J. Ghosh,Richard Gibbs,Christopher R. Gignoux,M. Ruban Gladwin,David E. Glahn,Stephanie M. Gogarten,Da-Wei Gong,Harald H.H. Gőring,Sharon L. Graw,Kathryn J. Gray,Daniel Grine,Colin Gross,C. Charles Gu,Yue Guan,Xiuqing Guo,Namrata Gupta,Jeffrey Haessler,Michael N. Hall,Yi Han,Patrick J. Hanly,Daniel N. Harris,Nicola L. Hawley,Jiang He,Benjamin D. Heavner,Susan R. Heckbert,Ryan Christopher Hernandez,David Herrington,Craig P. Hersh,Bertha Hidalgo,James E. Hixson,Brian D. Hobbs,John Hokanson,Elliot Hong,Karin F. Hoth,Chao A. Hsiung,Jianhong Hu,Yi Jen Hung,Haley Huston,Chii-Min Hwu,Marguerite R. Irvin,Rebecca D. Jackson,Deepti Jain,Cashell E. Jaquish,Jill M. Johnsen,Craig Johnson,Richard Karl. Johnston,Kimberly Jones,Hyun Min Kang,Robert Kaplan,Sharon L.R. Kardia,Shannon Jeanne Kelly,Eimear E. Kenny,Michael Kessler,Alyna T. Khan,Ziad Khan,Wonji Kim,John Kimoff,Greg Kinney,Barbara A. Konkle,Charles Kooperberg,Holly B. Kramer,Christoph Lange,Ethan M. Lange,Leslie A. Lange,Cathy C. Laurie,Cecelia A. Laurie,Meryl S. LeBoff,Jiwon Lee,Sandra L. Lee,Wen-Jane Lee,Jonathon LeFaive,David K. Levine,Joshua P. Lewis,Xiaohui Li,Yun Li,Henry J. Lin,Honghuang Lin,Xihong Lin,Simin Liu,Yongmei Liu,Yu Liu,Ruth J. F. Loos,Steven A. Lubitz,Kathryn L. Lunetta,James Luo,Ulysses J. Magalang,Michael P. Mahaney,Barry J. Make,Ani Manichaikul,Alisa K. Manning,Joanna Manson,Lisa A. Martin,Melissa A. Marton,Susan Mathai,Rasika A. Mathias,Susanne May,Patrick F. McArdle,M. McDonald,Sean K. McFarland,Stephen T. McGarvey,Daniel J. McGoldrick,Caitlin P. McHugh,Becky McNeil,Hao Mei,James B. Meigs,Vipin Menon,Luisa Mestroni,Ginger A. Metcalf,Deborah A. Meyers,Emmanuel Mignot,Julie L. Mikulla,Nancy Min,Mollie A. Minear,Ryan L. Minster,Braxton D. Mitchell,Matthew Moll,Zeineen Momin,May E. Montasser,Courtney G. Montgomery,Donna M. Muzny,Josyf C. Mychaleckyj,Girish N. Nadkarni,Rakhi Naik,Take Naseri,Sergei Nekhai,Sarah C. Nelson,Bonnie Neltner,Caitlin E. Nessner,Deborah A. Nickerson,Osuji Nkechinyere,Kari E. North,Jeffrey R. O'Connell,T. O’Connor,Heather M. Ochs-Balcom,Geoffrey Okwuonu,Allan Pack,David T. Paik,Nicholette D. Palmer,James S. Pankow,George J. Papanicolaou,Cora Parker,Gina M. Peloso,Juan M. Peralta,Marco V Perez,James C. Perry,Ulrike Peters,Patricia A. Peyser,L. Phillips,Jacob Pleiness,Toni I. Pollin,Wendy S. Post,Julia Powers Becker,Meher Preethi Boorgula,Michael Preuss,Bruce M. Psaty,Pankaj Qasba,Dandi Qiao,Zhaohui S. Qin,Nicholas Rafaels,Laura M. Raffield,Mahitha Rajendran,D. C. Rao,Laura J. Rasmussen-Torvik,Aakrosh Ratan,Susan Redline,Robert M. Reed,Catherine Reeves,E. Regan,Alexander P. Reiner,Muagututi‘a Sefuiva Reupena,Kenneth Rice,Stephen S. Rich,Rébecca Robillard,Nicolas Robine,Dan Roden,Carolina Roselli,Jerome I. Rotter,Ingo Ruczinski,Alexi M Runnels,Pamela Russell,Sarah E. Ruuska,Kathleen A. Ryan,Ester Cerdeira Sabino,Danish Saleheen,Shabnam Salimi,Sejal Salvi,Steven L. Salzberg,Kevin Sandow,Vijay G. Sankaran,Jireh Santibanez,Karen Schwander,David A. Schwartz,Frank C. Sciurba,Christine E. Seidman,Jonathan Seidman,Frédéric Sériès,Vivien A. Sheehan,Stephanie Sherman,Amol C. Shetty,Aniket Shetty,Wayne H-H Sheu,M. Benjamin Shoemaker,Brian H. Silver,Edwin K. Silverman,Robert Skomro,Jennifer A. Smith,Josh Smith,Nicholas L. Smith,Tanja Smith,Sylvia Smoller,Beverly M. Snively,Michael Snyder,Tamar Sofer,Nona Sotoodehnia,Adrienne M. Stilp,Garrett R. Storm,Elizabeth A. Streeten,Jessica Lasky-Su,Yun Ju Sung,Jody S. Sylvia,Adam A. Szpiro,Daniel Taliun,Hua Tang,Margaret A. Taub,Kent D. Taylor,Matthew D. Taylor,Simeon I. Taylor,Marilyn I. Telen,Timothy A. Thornton,M. Threlkeld,Lesley F. Tinker,David L. Tirschwell,Sarah A. Tishkoff,Hemant K. Tiwari,Catherine Tong,Russell P. Tracy,Michael Y. Tsai,Dhananjay Vaidya,David Van Den Berg,Peter VandeHaar,Scott I. Vrieze,Tarik Walker,Robert B. Wallace,Avram D. Walts,Fei Fei Wang,Heming Wang,Jiongming Wang,Karol E. Watson,Jennifer Watt,Daniel E. Weeks,Bruce Weir,Scott T. Weiss,Lu-Chen Weng,Jennifer Wessel,Cristen J. Willer,Kayleen Williams,L. Keoki Williams,Scott M. Williams,Carla F. Wilson,James F. Wilson,Lara Heermans Winterkorn,Quenna Wong,Joseph M. Wu,Huichun Xu,Lisa R. Yanek,Ivana V. Yang,Ketian Yu,Yingze Zhang,Snow Xueyan Zhao,Wei Zhao,Xiaofeng Zhu,Elad Ziv,Michael C. Zody,Sebastian Zoellner,Benjamin L. Ebert,Pradeep Natarajan +437 more
Posted ContentDOI
Multiset correlation and factor analysis enables exploration of multi-omic data
Brielin C. Brown,Collin Wang,Silva Kasela,François Aguet,Daniel Nachun,Kent D. Taylor,Russell P. Tracy,Peter Durda,Yongmei Liu,W. Craig Johnson,David Van Den Berg,Namrata Gupta,S.B. Gabriel,Josh Smith,R. E. Gerzsten,C. Clish,Quenna Wong,George J. Papanicolau,Thomas W. Blackwell,Jerome I. Rotter,Stephen S. Rich,Kristin G. Ardlie,David A. Knowles,Tuuli Lappalainen +23 more
TL;DR: Multi-set Correlation and Factor Analysis is introduced, an unsupervised integration method that enables fast inference of shared and private factors in multi-modal data that infers a shared space that captures clinically relevant molecular processes.
Posted ContentDOI
Fine-mapping and QTL tissue-sharing information improve causal gene identification and transcriptome prediction performance
Alvaro N. Barbeira,Yanyu Liang,Rodrigo Bonazzola,Gao Wang,Heather E. Wheeler,Owen Melia,François Aguet,GTEx Consortiumt,Kristin G. Ardlie,Xiaoquan Wen,Hae Kyung Im +10 more
TL;DR: It is found that informing prediction models with posterior causal probability from fine-mapping and borrowing information across tissues lead to better performance in terms of number and proportion of significant associations that are colocalized and the proportion of silver standard genes identified as indicated by precision-recall and ROC (Receiver Operating Characteristic) curves.