Banaras Hindu University

About: Banaras Hindu University is a education organization based out in Varanasi, Uttar Pradesh, India. It is known for research contribution in the topics: Population & Catalysis. The organization has 11858 authors who have published 23917 publications receiving 464677 citations. The organization is also known as: Kashi Hindu Vishvavidyalay & Benares Hindu University.

Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis

Abstract: The Dof (DNA binding with One Finger) family represents a classic zinc-finger transcription factors involved with multifarious roles exclusively in plants. There exists great diversity in terms of number of Dof genes observed in different crops. In current study, a total of 28 putative Dof genes have been predicted in silico from the recently available whole genome shotgun sequence of Sorghum bicolor (L.) Moench (with assigned accession numbers TPA:BK006983–BK007006 and TPA:BK007079–BK007082). The predicted SbDof genes are distributed on nine out of ten chromosomes of sorghum and most of these genes lack introns based on canonical intron/exon structure. Phylogenetic analysis of 28 SbDof proteins resulted in four subgroups constituting six clusters. The comparative phylogenetic analysis of these Dof proteins along with 30 rice and 36 Arabidopsis Dof proteins revealed six major groups similar to what has been observed earlier for rice and Arabidopsis. Motif analysis revealed the presence of conserved 50–52 amino acids Dof domain uniformly distributed across all the 28 Dof proteins of sorghum. The in silico cis-regulatory elements analysis of these SbDof genes suggested its diverse functions associated with light responsiveness, endosperm specific gene expression, hormone responsiveness, meristem specific expression and stress responsiveness.

Internally consistent recalibrations of mineral equilibria for geothermobarometry involving garnet–orthopyroxene–plagioclase–quartz assemblages and their application to the South Indian granulites

Abstract: Three reactions are calibrated as geothermobarometers for garnet–orthopyroxene–plagioclase–quartz assemblages, namely: 1/2 ferrosilite + 1/3 pyrope ± 1/2 enstatite + 1/3 almandine (A): ferrosilite + anorthite ± 2/3 almandine + 1/3 grossularite + quartz (B); and enstatite + anorthite ± 2/3 pyrope + 1/3 grossularite + quartz (C). The internally consistent geothermobarometers based on reactions (A), (B) and (C) are calibrated from experimental data only. The thermodynamic parameters of reaction (A) are derived from published experimental data in the FMAS system (n= 104) in the range 700–1400°C and 5–50 kbar, while those for reaction (B) are derived by summation of the existing reversed experimental data of the mineral equilibria: ferrosilite ± fayalite + quartz (D) and anorthite + fayalite ± 2/3 almandine + 1/3 grossularite (E). The retrieved thermodynamic parameters for reactions (A), (B) and (C) are, respectively: (ΔH0, cal) -3367 ± 209, -2749 ± 350 and +3985 ± 545; (ΔS0, cal K−1) -1.634 ± 0.163, -8.644 ± 0.298 and -5.376 ± 0.391; and (ΔV01,298, cal bar−1) -0.024, -0.60946 and -0.5614. On a one-cation basis, the derived Margules parameters of the ternary Ca–Fe–Mg in garnet are: WFe–Mg= -1256 + 1.0 (∼0.23) T(K), WMg–Fe= 2880 -1.7 (∼0.13) T(K), WCa–Mg= 4047 (∼77) -1.5 T(K), WMg–Ca= 1000 (∼77) -1.5 T(K), WCa–Fe= -723 + 0.332 (∼0.02) T(K), WFe–Ca= 1090, (cal) and the ternary constant C123= -4498 + 1.516 (∼0.265) T(K) cal (subregular solution model of non-ideal mixing); and Fe–Mg–Al in orthopyroxene: WFe–Mg= 948 (∼200) -0.34 (∼0.10) T(K), WFe–Al= -1950 (∼500) and WMg–Al= 0 (cal) (regular solution model of non-ideal mixing). The anorthite activity in plagioclase is calculated by the ‘Al-avoidance’model of subregular Ca–Na mixing commonly used for geobarometry based on reactions (B) and (C). When the geothermobarometers are applied to garnet–orthopyroxene–plagioclase–quartz assemblages (n= 45) of wide compositional range from the Precambrian South Indian granulites, temperature ranges of 690–860°C (X= 760 ± 45°C) and pressure ranges of 5–10 kbar were obtained. The P–T values were estimated simultaneously and there is no difference in the pressure calculated from PMg (reaction C) and PFe (reaction B). In the existing calibrations this difference is 1 kbar or more. Furthermore, there is no compositional dependence of the ln K of the experimental data in the FMAS (n= 104) and the CFMAS (n= 78) systems at different temperatures and the estimated temperatures of the South Indian granulites.