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Dissecting human disease with single-cell omics: application in model systems and in the clinic.

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TLDR
The current state of the art of single-cell techniques and their potential applications in deciphering the heterogeneous nature of diseases and tailoring personalised therapies are summarized.
Abstract
Probing cellular population diversity at single-cell resolution became possible only in recent years. The popularity of single-cell 'omic' approaches, which allow researchers to dissect sample heterogeneity and cell-to-cell variation, continues to grow. With continuous technological improvements, single-cell omics are becoming increasingly prevalent and contribute to the discovery of new and rare cell types, and to the deciphering of disease pathogenesis and outcome. Animal models of human diseases have significantly facilitated our understanding of the mechanisms driving pathologies and resulted in the development of more efficient therapies. The application of single-cell omics to animal models improves the precision of the obtained insights, and brings single-cell technology closer to the clinical field. This Review focuses on the use of single-cell omics in cellular and animal models of diseases, as well as in samples from human patients. It also highlights the potential of these approaches to further improve the diagnosis and treatment of various pathologies, and includes a discussion of the advantages and remaining challenges in implementing these technologies into clinical practice.

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Journal ArticleDOI

Single-cell RNA sequencing in cardiovascular development, disease and medicine.

TL;DR: The currently available scRNA-seq technologies and analytical tools are summarized and the latest findings using sc RNA-seq that have substantially improved knowledge on the development of the cardiovascular system and the mechanisms underlying cardiovascular diseases are discussed.
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Cell engineering: Biophysical regulation of the nucleus.

TL;DR: This review will highlight the recent progress in nuclear biomechanics and mechanobiology in the context of cell engineering, tissue remodeling and disease development.
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Materials control of the epigenetics underlying cell plasticity

TL;DR: How materials guide the cellular epigenetic landscape is explored and how engineered materials target cell plasticity is discussed, particularly through dynamic changes in histone methylation and acetylation.
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Single Cell Metabolomics: A Future Tool to Unmask Cellular Heterogeneity and Virus-Host Interaction in Context of Emerging Viral Diseases.

TL;DR: Single cell metabolomics (SCM) emerges as necessity to explore such minute details of virus-host interface and the potential of SCM has already been exploited to resolve several biological conundrums.
Journal ArticleDOI

Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields

TL;DR: Technologies that will be crucial to interrogate key questions in chromatin and chromosome biology are shone a spotlight on including state-of-the-art microscopy techniques, tools to physically manipulate chromatin, single-cell methods to measure chromatin accessibility, computational imaging with neural networks and analytical tools to interpret chromatin structure and dynamics.
References
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Journal ArticleDOI

mRNA-Seq whole-transcriptome analysis of a single cell.

TL;DR: A single-cell digital gene expression profiling assay with only a single mouse blastomere is described, which detected the expression of 75% more genes than microarray techniques and identified 1,753 previously unknown splice junctions called by at least 5 reads.
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Tumour evolution inferred by single-cell sequencing

TL;DR: It is shown that with flow-sorted nuclei, whole genome amplification and next generation sequencing the authors can accurately quantify genomic copy number within an individual nucleus and indicate that tumours grow by punctuated clonal expansions with few persistent intermediates.
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RNAscope: A Novel in Situ RNA Analysis Platform for Formalin-Fixed, Paraffin-Embedded Tissues

TL;DR: RNAscope is described, a novel RNA ISH technology with a unique probe design strategy that allows simultaneous signal amplification and background suppression to achieve single-molecule visualization while preserving tissue morphology and may enable rapid development of RNAISH-based molecular diagnostic assays.
Journal ArticleDOI

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

TL;DR: Smart-seq2 with improved reverse transcription, template switching and preamplification to increase both yield and length of cDNA libraries generated from individual cells to improve detection, coverage, bias and accuracy.
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