D
Denise Slenter
Researcher at Maastricht University
Publications - 19
Citations - 1276
Denise Slenter is an academic researcher from Maastricht University. The author has contributed to research in topics: Computer science & Biology. The author has an hindex of 6, co-authored 13 publications receiving 670 citations. Previous affiliations of Denise Slenter include University of Amsterdam.
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Journal ArticleDOI
WikiPathways : a multifaceted pathway database bridging metabolomics to other omics research
Denise Slenter,Martina Kutmon,Kristina Hanspers,Anders Riutta,Jacob Windsor,Nuno Nunes,Jonathan Mélius,Elisa Cirillo,Susan L. Coort,Daniela Digles,Friederike Ehrhart,Pieter Giesbertz,Marianthi Kalafati,Marvin Martens,Ryan A. Miller,Kozo Nishida,Linda Rieswijk,Andra Waagmeester,Lars M. T. Eijssen,Lars M. T. Eijssen,Chris T. Evelo,Alexander R. Pico,Egon Willighagen +22 more
TL;DR: There is a doubling of the number of annotated metabolite nodes in WikiPathways and an OpenAPI documentation of the authors' web services and the FAIR annotation of resources to increase the interoperability of the knowledge encoded in these pathways and experimental omics data.
Journal ArticleDOI
WikiPathways: connecting communities.
Marvin Martens,Ammar Ammar,Anders Riutta,Andra Waagmeester,Denise Slenter,Kristina Hanspers,Ryan A. Miller,Daniela Digles,Elisson Nogueira Lopes,Friederike Ehrhart,Lauren J. Dupuis,Laurent A. Winckers,Susan L. Coort,Egon Willighagen,Chris T. Evelo,Alexander R. Pico,Martina Kutmon +16 more
TL;DR: The growth of WikiPathways over the last three years is shown, the new communities and collaborations of pathway authors and curators are highlighted, and various technologies to connect to external resources and initiatives are described.
Journal ArticleDOI
Wikidata as a knowledge graph for the life sciences.
Andra Waagmeester,Gregory S. Stupp,Sebastian Burgstaller-Muehlbacher,Benjamin M. Good,Malachi Griffith,Obi L. Griffith,Kristina Hanspers,Henning Hermjakob,Toby S. Hudson,Kevin Hybiske,Sarah M. Keating,Magnus Manske,Michael Mayers,Daniel Mietchen,Elvira Mitraka,Alexander R. Pico,Timothy E. Putman,Anders Riutta,Núria Queralt-Rosinach,Lynn M. Schriml,Thomas Shafee,Denise Slenter,Ralf Stephan,Katherine Thornton,Ginger Tsueng,Roger Tu,Sabah Ul-Hasan,Egon Willighagen,Chunlei Wu,Andrew I. Su +29 more
TL;DR: The breadth and depth of the biomedical knowledge contained within Wikidata is described, and the open-source tools built to add information toWikidata and to synchronize it with source databases are discussed.
Journal ArticleDOI
Bloodstain Pattern Analysis: implementation of a fluid dynamic model for position determination of victims
TL;DR: This study determines how accurately the location of the origin can be estimated when including gravity and drag into the trajectory reconstruction and enables investigators to determine if the victim was sitting or standing, or it might be possible to connect wounds on the body to specific patterns, which is important for crime scene reconstruction.
Journal ArticleDOI
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.
Marek Ostaszewski,Anna Niarakis,Anna Niarakis,Alexander Mazein,Inna Kuperstein,Inna Kuperstein,Robert Phair,Aurelio Orta-Resendiz,Vidisha Singh,Sara Sadat Aghamiri,Marcio Luis Acencio,Enrico Glaab,Andreas Ruepp,Gisela Fobo,Corinna Montrone,Barbara Brauner,Goar Frishman,Luis Cristobal Monraz Gomez,Luis Cristobal Monraz Gomez,Julia Somers,Matti Hoch,Shailendra K. Gupta,Julia Scheel,Hanna Borlinghaus,Tobias Czauderna,Falk Schreiber,Falk Schreiber,Arnau Montagud,Miguel Ponce de Leon,Akira Funahashi,Yusuke Hiki,Noriko Hiroi,Takahiro G. Yamada,Andreas Dräger,Alina Renz,Muhammad Naveez,Muhammad Naveez,Zsolt Bocskei,Francesco Messina,Daniela Börnigen,Liam Fergusson,Marta Conti,Marius Rameil,Vanessa Nakonecnij,Jakob Vanhoefer,Leonard Schmiester,Leonard Schmiester,Muying Wang,Emily E. Ackerman,Jason E. Shoemaker,Jeremy Zucker,Kristie L. Oxford,Jeremy Teuton,Ebru Kocakaya,Gokce Yagmur Summak,Kristina Hanspers,Martina Kutmon,Susan L. Coort,Lars M. T. Eijssen,Lars M. T. Eijssen,Friederike Ehrhart,Friederike Ehrhart,D A B Rex,Denise Slenter,Marvin Martens,Nhung Pham,Robin Haw,Bijay Jassal,Lisa Matthews,M Orlic-Milacic,Andrea Senff Ribeiro,Andrea Senff Ribeiro,Karen Rothfels,Veronica Shamovsky,Ralf Stephan,Cristoffer Sevilla,Thawfeek M. Varusai,Jean-Marie Ravel,Rupsha Fraser,Vera Ortseifen,Silvia Marchesi,Piotr Gawron,Piotr Gawron,Ewa Smula,Laurent Heirendt,Venkata P. Satagopam,Guanming Wu,Anders Riutta,Martin Golebiewski,Stuart Owen,Carole Goble,Xiaoming Hu,Rupert W. Overall,Rupert W. Overall,Rupert W. Overall,Dieter Maier,Angela Bauch,Benjamin M. Gyori,John A. Bachman,Carlos Vega,Valentin Grouès,M. Vazquez,Pablo Porras,Luana Licata,Marta Iannuccelli,Francesca Sacco,Anastasia P. Nesterova,Anton Yuryev,Anita de Waard,Dénes Türei,Augustin Luna,Özgün Babur,Sylvain Soliman,Alberto Valdeolivas,Marina Esteban-Medina,Maria Peña-Chilet,Kinza Rian,Tomáš Helikar,Bhanwar Lal Puniya,Dezso Modos,Agatha Treveil,Marton Olbei,Bertrand De Meulder,Stephane Ballereau,Aurelien Dugourd,Aurelien Dugourd,Aurélien Naldi,Vincent Noël,Vincent Noël,Laurence Calzone,Laurence Calzone,Chris Sander,Emek Demir,Tamas Korcsmaros,Tom C. Freeman,Franck Augé,Jacques S. Beckmann,Jan Hasenauer,Olaf Wolkenhauer,Egon L Wilighagen,Alexander R. Pico,Chris T. Evelo,Marc Gillespie,Marc Gillespie,Lincoln Stein,Lincoln Stein,Henning Hermjakob,Peter D'Eustachio,Julio Saez-Rodriguez,Joaquín Dopazo,Alfonso Valencia,Alfonso Valencia,Hiroaki Kitano,Emmanuel Barillot,Emmanuel Barillot,Charles Auffray,Rudi Balling,Reinhard Schneider,Covid Disease Map Community +158 more
TL;DR: The COVID-19 Disease Map (C19DMap) as mentioned in this paper is a large-scale community effort to build an open access, interoperable and computable repository of COVID19 molecular mechanisms.