J
James J. Collins
Researcher at Massachusetts Institute of Technology
Publications - 700
Citations - 105255
James J. Collins is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: Synthetic biology & Population. The author has an hindex of 151, co-authored 669 publications receiving 89476 citations. Previous affiliations of James J. Collins include Baylor College of Medicine & University at Albany, SUNY.
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Journal ArticleDOI
Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types.
Benjamin E. Mead,Jose Ordovas-Montanes,Alexandra Provost Braun,Lauren Levy,Lauren Levy,Lauren Levy,Prerna Bhargava,Prerna Bhargava,Matthew J. Szucs,Dustin A. Ammendolia,Dustin A. Ammendolia,Melanie A. MacMullan,Xiaolei Yin,Travis K. Hughes,Marc H. Wadsworth,Rushdy Ahmad,Seth Rakoff-Nahoum,Steven A. Carr,Robert Langer,James J. Collins,Alex K. Shalek,Jeffrey M. Karp +21 more
TL;DR: In this paper, a massively parallel single-cell RNA-seq framework was proposed to compare cell types and states found in vivo to those of in vitro models such as organoids.
Journal ArticleDOI
DNA sense-and-respond protein modules for mammalian cells
Shimyn Slomovic,James J. Collins +1 more
TL;DR: This work establishes a synthetic biology framework for endowing mammalian cells with sentinel capabilities, which provides a programmable means to cull infected cells and increases the repertoire of inducible parts in synthetic biology.
Cas9 gRNA engineering for genome editing, activation and repression
Alejandro Chavez,Marcelle Tuttle,Raj Chari,Dmitry Ter-Ovanesyan,Jason Qian,Benjamin W. Pruitt,Joanna Buchthal,George M. Church,Samira Kiani,Richard N. Hall,Jacob Beal,Suhani Vora,Emma J. K. Kowal,Mohammad R. Ebrahimkhani,James J. Collins,Ron Weiss +15 more
TL;DR: It is demonstrated that by altering the length of Cas9-associated guide RNA (gRNA) it is able to control Cas9 nuclease activity and simultaneously perform genome editing and transcriptional regulation with a single Cas9 protein.
Journal ArticleDOI
Large-scale RNAi screening uncovers therapeutic targets in the parasite Schistosoma mansoni
Jipeng Wang,Carlos Paz,Gilda Padalino,Avril Coghlan,Zhigang Lu,Irina Gradinaru,Julie N. R. Collins,Matthew Berriman,Karl F. Hoffmann,James J. Collins +9 more
TL;DR: A large-scale RNA interference screen in adult Schistosoma mansoni is described that examined the function of 2216 genes, including 261 genes with phenotypes affecting neuromuscular function, tissue integrity, stem cell maintenance, and parasite survival and uncovered a pair of protein kinases that cooperate to maintain muscle-specific messenger RNA transcription.
Journal ArticleDOI
The effects of spaceflight on open-loop and closed-loop postural control mechanisms: human neurovestibular studies on SLS-2
TL;DR: It was found that the effective stochastic activity of the open-loop postural control schemes in three of the four crew members was increased following space-flight, indicating that although there may be in-flight adaptations to the vestibular system and/or proprioceptive system, input from the visual system can compensate for such changes during undisturbed stance.