P
Paul de Goede
Researcher at University of Amsterdam
Publications - 15
Citations - 577
Paul de Goede is an academic researcher from University of Amsterdam. The author has contributed to research in topics: Circadian rhythm & Brown adipose tissue. The author has an hindex of 9, co-authored 14 publications receiving 353 citations. Previous affiliations of Paul de Goede include American Academy of Arts and Sciences & Royal Netherlands Academy of Arts and Sciences.
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Journal ArticleDOI
Guidelines for Genome-Scale Analysis of Biological Rhythms
Michael E. Hughes,Katherine C. Abruzzi,Ravi Allada,Ron C. Anafi,Alaaddin Bulak Arpat,Alaaddin Bulak Arpat,Gad Asher,Pierre Baldi,Charissa de Bekker,Deborah Bell-Pedersen,Justin Blau,Steve Brown,M. Fernanda Ceriani,Zheng Chen,Joanna C. Chiu,Juergen Cox,Alexander M. Crowell,Jason P. DeBruyne,Derk-Jan Dijk,Luciano DiTacchio,Francis J. Doyle,Giles E. Duffield,Jay C. Dunlap,Kristin Eckel-Mahan,Karyn A. Esser,Garret A. FitzGerald,Daniel B. Forger,Lauren J. Francey,Ying-Hui Fu,Frédéric Gachon,David Gatfield,Paul de Goede,Susan S. Golden,Carla B. Green,John Harer,Stacey L. Harmer,Jeff Haspel,Michael H. Hastings,Hanspeter Herzel,Erik D. Herzog,Christy Hoffmann,Christian I. Hong,Jacob J. Hughey,Jennifer M. Hurley,Horacio O. de la Iglesia,Carl Hirschie Johnson,Steve A. Kay,Nobuya Koike,Karl Kornacker,Achim Kramer,Katja A. Lamia,Tanya L. Leise,Scott A. Lewis,Jiajia Li,Jiajia Li,Xiaodong Li,Andrew C. Liu,Jennifer J. Loros,Tami A. Martino,Jerome S. Menet,Martha Merrow,Andrew J. Millar,Todd C. Mockler,Felix Naef,Emi Nagoshi,Michael N. Nitabach,María Teresa Camacho Olmedo,Dmitri A. Nusinow,Louis J. Ptáček,David A. Rand,Akhilesh B. Reddy,Akhilesh B. Reddy,Maria S. Robles,Till Roenneberg,Michael Rosbash,Marc D. Ruben,Samuel S. C. Rund,Aziz Sancar,Paolo Sassone-Corsi,Amita Sehgal,Scott Sherrill-Mix,Debra J. Skene,Kai-Florian Storch,Joseph S. Takahashi,Hiroki R. Ueda,Han Wang,Charles J. Weitz,Pål O. Westermark,Herman Wijnen,Ying Xu,Gang Wu,Seung Hee Yoo,Michael W. Young,Eric E. Zhang,Tomasz Zielinski,John B. Hogenesch +95 more
TL;DR: CircaInSilico is introduced, a web-based application for generating synthetic genome biology data to benchmark statistical methods for studying biological rhythms, and several unmet analytical needs, including applications to clinical medicine, are discussed and productive avenues to address them are suggested.
Journal ArticleDOI
Circadian rhythms in mitochondrial respiration.
Paul de Goede,Jakob Wefers,Eline Constance Brombacher,Patrick Schrauwen,Andries Kalsbeek,Andries Kalsbeek +5 more
TL;DR: Recent advances in the study of circadian rhythms of mitochondria are summarized and how this is linked to the molecular circadian clock is summarized.
Journal ArticleDOI
Altered mitochondrial metabolism in the insulin-resistant heart.
Marina Makrecka-Kuka,Edgars Liepinsh,Andrew J. Murray,Hélène Lemieux,Maija Dambrova,Kersti Tepp,Marju Puurand,Tuuli Kaambre,Woo Hyun Han,Paul de Goede,Katie A. O'Brien,Belma Turan,Erkan Tuncay,Yusuf Olgar,Anabela P. Rolo,Carlos M. Palmeira,Neoma T. Boardman,Rob C. I. Wüst,Terje S. Larsen +18 more
TL;DR: This review addresses the metabolic changes in the diabetic heart, focusing on the loss of metabolic flexibility and cardiac mitochondrial function, and explores how lifestyle and pharmacological interventions can prevent and treat metabolic and mitochondrial dysfunction in diabetes.
Journal ArticleDOI
Complex interaction between circadian rhythm and diet on bile acid homeostasis in male rats.
Hannah M Eggink,Johanneke E. Oosterman,Paul de Goede,Emmely M de Vries,Ewout Foppen,Martijn Koehorst,Albert K. Groen,Anita Boelen,Johannes A. Romijn,Susanne E. la Fleur,Susanne E. la Fleur,Maarten R. Soeters,Andries Kalsbeek,Andries Kalsbeek +13 more
TL;DR: Plasma bile acids and key genes in bile acid biosynthesis are entrained by food intake as well as the hepatic molecular clock.
Journal ArticleDOI
Differential effects of diet composition and timing of feeding behavior on rat brown adipose tissue and skeletal muscle peripheral clocks
Paul de Goede,Satish Sen,Satish Sen,Satish Sen,Johanneke E. Oosterman,Ewout Foppen,Remi Jansen,Susanne E. la Fleur,Susanne E. la Fleur,Etienne Challet,Andries Kalsbeek,Andries Kalsbeek +11 more
TL;DR: Both feeding at the wrong time of day and diet composition disturb the peripheral clocks in SM and BAT, but to different degrees and thereby result in a further desynchronization between metabolically active tissues such as SM, BAT, WAT and liver.