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Open AccessJournal ArticleDOI

Genomics of AML: Clinical Applications of Next-Generation Sequencing

John S. Welch, +1 more
- 10 Dec 2011 - 
- Vol. 2011, Iss: 1, pp 30-35
TLDR
How next-generation sequencing is being used to study cancer genomes is discussed, which offers the potential for an individualized approach to treatment in AML and brings us one step closer to personalized medicine.
Abstract
In the past decade, a series of technological advances have revolutionized our ability to interrogate cancer genomes, culminating in whole-genome sequencing, which provides genome-wide coverage at a single base-pair resolution. As sequencing technologies improve and costs decrease, it is likely that whole-genome sequencing of cancer cells will become commonplace in the diagnostic workup of patients with acute myelogenous leukemia (AML) and other cancers. The unprecedented molecular characterization provided by whole-genome sequencing offers the potential for an individualized approach to treatment in AML, bringing us one step closer to personalized medicine. In this chapter, we discuss how next-generation sequencing is being used to study cancer genomes. Recent publications of whole-genome sequencing in AML are reviewed and current limitations of whole-genome sequencing are examined, as well as current and potential future clinical applications of whole-genome sequencing.

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Citations
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Journal ArticleDOI

Solving the molecular diagnostic testing conundrum for Mendelian disorders in the era of next-generation sequencing: single-gene, gene panel, or exome/genome sequencing

TL;DR: A testing algorithm is proposed to help clinicians opt for the most appropriate molecular diagnostic tool for each scenario, and current limitations of next-generation sequencing technology and variant interpretation capabilities caution us against offering exome sequencing or genome sequencing as either stand-alone or first-choice diagnostic approaches.
Patent

Monitoring health and disease status using clonotype profiles

TL;DR: In this article, a method for using DNA sequencing to identify personalized, or patient-specific biomarkers in patients with lymphoid neoplasms, autoimmune disease and other conditions is presented.
Journal ArticleDOI

Application of next-generation sequencing in clinical oncology to advance personalized treatment of cancer.

TL;DR: Significant challenges will have to be overcome to translate NGS to the bedside of cancer patients, particularly with respect to the requirement for simpler assays, more flexible throughput, shorter turnaround time, and most importantly, easier data analysis and interpretation.
Patent

Method of measuring adaptive immunity

TL;DR: A method of measuring immunocompetence is described in this article, which is based on quantifying T-cell diversity by calculating the number of diverse t-cell receptor (TCR) beta chain variable regions from blood cells.
Journal ArticleDOI

Analysis of Hepatitis C Virus Intrahost Diversity across the Coding Region by Ultradeep Pyrosequencing

TL;DR: The approach described here is broadly applicable to studies of viral diversity and could help to improve the efficacy of direct-acting antiviral agents (DAA) in the treatment of HCV-infected patients.
References
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Journal ArticleDOI

Initial sequencing and analysis of the human genome.

Eric S. Lander, +248 more
- 15 Feb 2001 - 
TL;DR: The results of an international collaboration to produce and make freely available a draft sequence of the human genome are reported and an initial analysis is presented, describing some of the insights that can be gleaned from the sequence.
Journal ArticleDOI

Sequencing technologies-the next generation

TL;DR: A technical review of template preparation, sequencing and imaging, genome alignment and assembly approaches, and recent advances in current and near-term commercially available NGS instruments is presented.
Journal ArticleDOI

Human DNA methylomes at base resolution show widespread epigenomic differences

TL;DR: The first genome-wide, single-base-resolution maps of methylated cytosines in a mammalian genome, from both human embryonic stem cells and fetal fibroblasts, along with comparative analysis of messenger RNA and small RNA components of the transcriptome, several histone modifications, and sites of DNA-protein interaction for several key regulatory factors were presented in this article.
Journal Article

A minute chromosome in human chronic granulocytic leukemia

P. C. Nowell
- 01 Jan 1960 - 
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