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Open AccessJournal ArticleDOI

Ivermectin is a potent inhibitor of flavivirus replication specifically targeting NS3 helicase activity: new prospects for an old drug

TLDR
Ivermectin, a broadly used anti-helminthic drug, proved to be a highly potent inhibitor of YFV replication and inhibited, although less efficiently, the replication of several other flaviviruses, i.e. dengue fever, Japanese encephalitis and tick-borne encephalopathy viruses.
Abstract
Objectives Infection with yellow fever virus (YFV), the prototypic mosquito-borne flavivirus, causes severe febrile disease with haemorrhage, multi-organ failure and a high mortality. Moreover, in recent years the Flavivirus genus has gained further attention due to re-emergence and increasing incidence of West Nile, dengue and Japanese encephalitis viruses. Potent and safe antivirals are urgently needed.

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The FDA-approved drug ivermectin inhibits the replication of SARS-CoV-2 in vitro.

TL;DR: Ivermectin, an FDA-approved anti-parasitic previously shown to have broad-spectrum anti-viral activity in vitro, is an inhibitor of the causative virus (SARS-CoV-2), with a single addition to Vero-hSLAM cells 2 h post infection able to effect ~5000-fold reduction in viral RNA at 48 h.
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An Update on Current Therapeutic Drugs Treating COVID-19.

TL;DR: It is hoped that this review will provide useful and most updated therapeutic drugs to prevent, control, and treat COVID-19 patients until the approval of vaccines and specific drugs targeting SARS-CoV-2.
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Virtual screening for potential inhibitors of human hexokinase II for the development of anti-dengue therapeutics

TL;DR: Novel compounds are proposed, which may act as potential drugs against DENV by inhibiting HKII’s activity by using the computational studies.
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Ten years of dengue drug discovery: Progress and prospects

TL;DR: The knowledge accumulated during the past decade has provided a better rationale for ongoing dengue drug discovery and it is optimistic that this continuous, concerted effort will lead to an effective d Dengue therapy.
References
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Journal ArticleDOI

Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function

TL;DR: It is shown that both the traditional and Lamarckian genetic algorithms can handle ligands with more degrees of freedom than the simulated annealing method used in earlier versions of AUTODOCK, and that the Lamarckia genetic algorithm is the most efficient, reliable, and successful of the three.
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An approach to computing electrostatic charges for molecules

TL;DR: In this article, an approach for deriving net atomic charges from ab initio quantum mechanical calculations using a least squares fit of the quantum mechanically calculated electrostatic potential to that of the partial charge model is presented.
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A computational procedure for determining energetically favorable binding sites on biologically important macromolecules.

TL;DR: The interaction of a probe group with a protein of known structure is computed at sample positions throughout and around the macromolecule, giving an array of energy values.
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A structural perspective of the flavivirus life cycle

TL;DR: The structural organization of these viruses and their associated structural proteins has provided insight into the molecular transitions that occur during the viral life cycle, such as assembly, budding, maturation and fusion.
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Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism.

TL;DR: Two different structures of PcrA DNA helicase complexed with the same single strand tailed DNA duplex are determined, providing snapshots of different steps on the catalytic pathway, providing evidence against an "active rolling" model for helicase action but are instead consistent with an "inchworm" mechanism.
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