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Journal ArticleDOI

Microbial biogeography : putting microorganisms on the map

TLDR
Current evidence confirms that, as proposed by the Baas-Becking hypothesis, 'the environment selects' and is, in part, responsible for spatial variation in microbial diversity, but recent studies also dispute the idea that 'everything is everywhere'.
Abstract
We review the biogeography of microorganisms in light of the biogeography of macroorganisms A large body of research supports the idea that free-living microbial taxa exhibit biogeographic patterns Current evidence confirms that, as proposed by the Baas-Becking hypothesis, 'the environment selects' and is, in part, responsible for spatial variation in microbial diversity However, recent studies also dispute the idea that 'everything is everywhere' We also consider how the processes that generate and maintain biogeographic patterns in macroorganisms could operate in the microbial world

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Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale.

TL;DR: The results suggest that the structure of soil bacterial communities is predictable, to some degree, across larger spatial scales, and the effect of soil pH on bacterial community composition is evident at even relatively coarse levels of taxonomic resolution.
Journal ArticleDOI

Bacterial Community Variation in Human Body Habitats Across Space and Time

TL;DR: The results indicate that the microbiota, although personalized, varies systematically across body habitats and time; such trends may ultimately reveal how microbiome changes cause or prevent disease.
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MEGAN analysis of metagenomic data

TL;DR: MEGAN, a new computer program that allows laptop analysis of large metagenomic data sets, is introduced and provides graphical and statistical output for comparing different data sets.
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A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

TL;DR: This work used a concatenated protein phylogeny as the basis for a bacterial taxonomy that conservatively removes polyphyletic groups and normalizes taxonomic ranks on the basis of relative evolutionary divergence.
References
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Journal Article

The Detection of Disease Clustering and a Generalized Regression Approach

Nathan Mantel
- 01 Feb 1967 - 
TL;DR: The technic to be given below for imparting statistical validity to the procedures already in vogue can be viewed as a generalized form of regression with possible useful application to problems arising in quite different contexts.
Book

Ecological Diversity and its Measurement

TL;DR: In this paper, the authors define definitions of diversity and apply them to the problem of measuring species diversity, choosing an index and interpreting diversity measures, and applying them to structural and structural diversity.
Book

The Unified Neutral Theory of Biodiversity and Biogeography

TL;DR: A study of the issue indicates that it is not a serious problem for neutral theory, and there is sometimes a difference between some of the simulation-based results of Hubbell and the analytical results of Volkov et al. (2003).
Book

Species Diversity in Space and Time

TL;DR: In this article, the authors present a hierarchical dynamic puzzle to understand the relationship between habitat diversity and species diversity and the evolution of the relationships between habitats diversity and diversity in evolutionary time.
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