J
Justin Buchanan
Researcher at University of California, San Diego
Publications - 15
Citations - 1170
Justin Buchanan is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Gene & Enhancer. The author has an hindex of 8, co-authored 12 publications receiving 616 citations. Previous affiliations of Justin Buchanan include Epigenomics AG & University of California, Berkeley.
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Journal ArticleDOI
Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development.
Cleber A. Trujillo,Richard Gao,Priscilla D. Negraes,Jing Gu,Justin Buchanan,Sebastian Preissl,Allen Wang,Wei Wu,Gabriel G. Haddad,Isaac A. Chaim,Alain Domissy,Matthieu Vandenberghe,Anna Devor,Gene W. Yeo,Bradley Voytek,Alysson R. Muotri +15 more
TL;DR: Human cortical organoids that dynamically change cellular populations during maturation and exhibited consistent increases in electrical activity over the span of several months show that the development of structured network activity in a human neocortex model may follow stable genetic programming.
Posted ContentDOI
Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells
Pascal Barbry,Christoph Muus,Christoph Muus,Malte D Luecken,Gökcen Eraslan,Avinash Waghray,Graham Heimberg,Lisa Sikkema,Yoshihiko Kobayashi,Eeshit Dhaval Vaishnav,Ayshwarya Subramanian,Christopher Smilie,Karthik A. Jagadeesh,Elizabeth Thu Duong,Evgenij Fiskin,Elena Torlai Triglia,Meshal Ansari,Peiwen Cai,Brian M. Lin,Justin Buchanan,Sijia Chen,Jian Shu,Jian Shu,Adam L. Haber,Adam L. Haber,Hattie Chung,Daniel T. Montoro,Taylor Adams,Hananeh Aliee,J. Samuel,Allon Zaneta Andrusivova,Ilias Angelidis,Orr Ashenberg,Kevin Bassler,Christophe Bécavin,Inbal Benhar,Joseph Bergenstråhle,Ludvig Bergenstråhle,Liam Bolt,Emelie Braun,Linh T. Bui,Mark Chaffin,Evgeny Chichelnitskiy,Joshua Chiou,Thomas M. Conlon,Michael S. Cuoco,Marie Deprez,David Fischer,Astrid Gillich,Joshua Gould,Minzhe Guo,Austin J. Gutierrez,Arun C. Habermann,Tyler Harvey,Peng He,Xiaomeng Hou,Xiaomeng Hou,Lijuan Hu,Alok Jaiswal,Peiyong Jiang,Theodoros Kapellos,Christin S. Kuo,Ludvig Larsson,Michael Leney-Greene,Kyungtae Lim,Monika Litviňuková,Monika Litviňuková,Ji Lu,Leif S. Ludwig,Wendy Luo,Henrike Maatz,Elo Madissoon,Lira Mamanova,Kasidet Manakongtreecheep,Kasidet Manakongtreecheep,Charles-Hugo Marquette,Ian Mbano,Alexi McAdams,Ross J. Metzger,Ahmad N. Nabhan,Sarah K. Nyquist,Lolita Penland,Olivier Poirion,Sergio Poli,Cancan Qi,Rachel Queen,Daniel Reichart,Daniel Reichart,Ivan O. Rosas,Jonas C. Schupp,Rahul Sinha,Rene Sit,Kamil Slowikowski,Kamil Slowikowski,Michal Slyper,Neal Smith,Neal Smith,Alex Sountoulidis,Maximilian Strunz,Dawei Sun,Carlos Talavera-López,Peng Tan,Jessica Tantivit,Jessica Tantivit,Kyle J. Travaglini,Nathan R. Tucker,Katherine A. Vernon,Katherine A. Vernon,Marc Wadsworth,Julia Waldman,Xiuting Wang,Wenjun Yan,William Zhao,Carly Ziegler +113 more
TL;DR: Differences in the cell type-specific expression of mediators of SARS-CoV-2 viral entry may be responsible for aspects of COVID-19 epidemiology and clinical course, and point to putative molecular pathways involved in disease susceptibility and pathogenesis.
Journal ArticleDOI
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics.
Christoph Muus,Malte D Luecken,Gökcen Eraslan,Lisa Sikkema,Avinash Waghray,Graham Heimberg,Yoshihiko Kobayashi,Eeshit Dhaval Vaishnav,Eeshit Dhaval Vaishnav,Ayshwarya Subramanian,Christopher Smillie,Karthik A. Jagadeesh,Elizabeth Thu Duong,Evgenij Fiskin,Elena Torlai Triglia,Meshal Ansari,Peiwen Cai,Brian M. Lin,Justin Buchanan,Sijia Chen,Jian Shu,Adam L. Haber,Adam L. Haber,Hattie Chung,Daniel T. Montoro,Taylor Adams,Hananeh Aliee,Samuel J. Allon,Samuel J. Allon,Samuel J. Allon,Zaneta Andrusivova,Ilias Angelidis,Orr Ashenberg,Kevin Bassler,Christophe Bécavin,Inbal Benhar,Joseph Bergenstråhle,Ludvig Bergenstråhle,Liam Bolt,Emelie Braun,Linh T. Bui,Steven Callori,Mark Chaffin,Evgeny Chichelnitskiy,Joshua Chiou,Thomas M. Conlon,Michael S. Cuoco,Anna S E Cuomo,Marie Deprez,Grant Duclos,Denise Fine,David S. Fischer,Shila Ghazanfar,Astrid Gillich +53 more
TL;DR: In this paper, cell-type-specific expression of ACE2, TMPRSS2 and CTSL across 107 single-cell RNA-sequencing studies from different tissues was assessed.
Journal ArticleDOI
Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes.
Allen Wang,Joshua Chiou,Olivier Poirion,Justin Buchanan,Michael J Valdez,Jamie M. Verheyden,Xiaomeng Hou,Parul Kudtarkar,Sharvari Narendra,Jacklyn M Newsome,Minzhe Guo,Minzhe Guo,Dina A. Faddah,Kai Zhang,Randee E. Young,Randee E. Young,Justinn Barr,Eniko Sajti,Ravi S. Misra,Heidie Huyck,Lisa Rogers,Cory Poole,JA Whitsett,JA Whitsett,Gloria S. Pryhuber,Yan Xu,Yan Xu,Kyle J. Gaulton,Sebastian Preissl,Xin Sun +29 more
TL;DR: These datasets will facilitate interpretation of risk loci for lung diseases and provide insight into regulatory logic underlying genes implicated in COVID-19 in individual lung cell types across age.
Journal ArticleDOI
Reintroduction of the archaic variant of NOVA1 in cortical organoids alters neurodevelopment.
Cleber A. Trujillo,Edward S. Rice,Nathan K. Schaefer,Isaac A. Chaim,Emily C. Wheeler,Assael A. Madrigal,Justin Buchanan,Sebastian Preissl,Allen Wang,Priscilla D. Negraes,Ryan A. Szeto,Roberto H. Herai,Alik Huseynov,Mariana Sacrini Ayres Ferraz,Fernando S. Borges,Alexandre Hiroaki Kihara,Ashley Byrne,Maximillian G. Marin,Christopher Vollmers,Angela N. Brooks,Jonathan D. Lautz,Jonathan D. Lautz,Katerina Semendeferi,Beth Shapiro,Gene W. Yeo,Stephen E. P. Smith,Stephen E. P. Smith,Richard E. Green,Alysson R. Muotri +28 more
TL;DR: In this paper, the evolutionarily conserved splicing regulator neuro-oncological ventral antigen 1 (NOVA1) plays a key role in neural development and function.