S
Shiori Maeda
Publications - 13
Citations - 2512
Shiori Maeda is an academic researcher. The author has contributed to research in topics: DNA demethylation & DNA methylation. The author has an hindex of 6, co-authored 11 publications receiving 2044 citations.
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Journal ArticleDOI
An atlas of active enhancers across human cell types and tissues
Robin Andersson,Claudia Gebhard,Irene Miguel-Escalada,Ilka Hoof,Jette Bornholdt,Mette Boyd,Yun Chen,Xiaobei Zhao,Xiaobei Zhao,Christian Schmidl,Takahiro Suzuki,Evgenia Ntini,Erik Arner,Eivind Valen,Eivind Valen,Kang Li,Lucia Schwarzfischer,Dagmar Glatz,Johanna Raithel,Berit Lilje,Nicolas Rapin,Frederik Otzen Bagger,Mette Rose Jørgensen,Peter Refsing Andersen,Nicolas Bertin,Owen J. L. Rackham,A. Maxwell Burroughs,J Kenneth Baillie,Yuri Ishizu,Yuri Shimizu,Erina Furuhata,Shiori Maeda,Yutaka Negishi,Christopher J. Mungall,Terrence F. Meehan,Timo Lassmann,Masayoshi Itoh,Hideya Kawaji,Naoto Kondo,Jun Kawai,Andreas Lennartsson,Carsten O. Daub,Peter Heutink,David A. Hume,Torben Heick Jensen,Harukazu Suzuki,Yoshihide Hayashizaki,Ferenc Müller,Alistair R. R. Forrest,Piero Carninci,Michael Rehli,Albin Sandelin +51 more
TL;DR: It is shown that enhancers share properties with CpG-poor messenger RNA promoters but produce bidirectional, exosome-sensitive, relatively short unspliced RNAs, the generation of which is strongly related to enhancer activity.
Journal ArticleDOI
Functional annotation of human long noncoding RNAs via molecular phenotyping
Jordan A. Ramilowski,Chi Wai Yip,Saumya Agrawal,Jen-Chien Chang,Yari Ciani,Ivan V. Kulakovskiy,Mickaël Mendez,Jasmine Li Ching Ooi,John F. Ouyang,Nicholas J. Parkinson,Andreas Petri,Leonie Roos,Jessica Severin,Kayoko Yasuzawa,Imad Abugessaisa,Altuna Akalin,Ivan Antonov,Erik Arner,Alessandro Bonetti,Hidemasa Bono,Beatrice Borsari,Frank Brombacher,Christopher J. F. Cameron,Carlo Vittorio Cannistraci,Ryan Cardenas,Melissa Cardon,Howard Y. Chang,Josée Dostie,Luca Ducoli,Alexander V. Favorov,Alexandre Fort,Diego Garrido,Noa Gil,Juliette Gimenez,Reto Guler,Lusy Handoko,Jayson Harshbarger,Akira Hasegawa,Yuki Hasegawa,Kosuke Hashimoto,Norihito Hayatsu,Peter Heutink,Tetsuro Hirose,Eddie Luidy Imada,Masayoshi Itoh,Bogumil Kaczkowski,Aditi Kanhere,Emily Kawabata,Hideya Kawaji,Tsugumi Kawashima,S. Thomas Kelly,Miki Kojima,Naoto Kondo,Haruhiko Koseki,Tsukasa Kouno,Anton Kratz,Mariola Kurowska-Stolarska,Andrew T. Kwon,Jeffrey T. Leek,Andreas Lennartsson,Marina Lizio,Fernando López-Redondo,Joachim Luginbühl,Shiori Maeda,Vsevolod J. Makeev,Vsevolod J. Makeev,Luigi Marchionni,Yulia A. Medvedeva,Yulia A. Medvedeva,Aki Minoda,Ferenc Müller,Manuel Muñoz-Aguirre,Mitsuyoshi Murata,Hiromi Nishiyori,Kazuhiro R. Nitta,Shuhei Noguchi,Yukihiko Noro,Ramil N. Nurtdinov,Yasushi Okazaki,Valerio Orlando,Denis Paquette,Callum J.C. Parr,Owen J. L. Rackham,Patrizia Rizzu,Diego Fernando Sánchez Martinez,Albin Sandelin,Pillay Sanjana,Colin A. Semple,Youtaro Shibayama,Divya M. Sivaraman,Takahiro Suzuki,Suzannah C. Szumowski,Michihira Tagami,Martin S. Taylor,Chikashi Terao,Malte Thodberg,Supat Thongjuea,Vidisha Tripathi,Igor Ulitsky,Roberto Verardo,Ilya E. Vorontsov,Chinatsu Yamamoto,Robert Young,J Kenneth Baillie,Alistair R. R. Forrest,Roderic Guigó,Michael M. Hoffman,Chung-Chau Hon,Takeya Kasukawa,Sakari Kauppinen,Juha Kere,Boris Lenhard,Claudio Schneider,Harukazu Suzuki,Ken Yagi,Michiel J. L. de Hoon,Jay W. Shin,Piero Carninci +117 more
TL;DR: The largest-to-date lncRNA knockdown data set with molecular phenotyping is disseminated for further exploration and functional roles for ZNF213-AS1 and lnc-KHDC3L-2 are highlighted.
Journal ArticleDOI
RUNX1 regulates site specificity of DNA demethylation by recruitment of DNA demethylation machineries in hematopoietic cells.
Takahiro Suzuki,Yuri Shimizu,Erina Furuhata,Shiori Maeda,Mami Kishima,Hajime Nishimura,Saaya Enomoto,Yoshihide Hayashizaki,Harukazu Suzuki +8 more
TL;DR: Zhang et al. as mentioned in this paper demonstrate that RUNX1 contributes DNA demethylation in a binding site-directed manner in human hematopoietic cells. But the role of the epigenetic role of runx1 remains unclear.
Journal ArticleDOI
A screening system to identify transcription factors that induce binding site-directed DNA demethylation
Takahiro Suzuki,Shiori Maeda,Erina Furuhata,Yuri Shimizu,Hajime Nishimura,Mami Kishima,Harukazu Suzuki +6 more
TL;DR: A screening system that involves the ectopic expression of target TFs in model cells followed by DNA methylome analysis and overrepresentation analysis of the corresponding TF binding motif at differentially methylated regions successfully identified binding site-directed demethylation of SPI1.
RUNX1 regulates site-specificity of DNA demethylation by recruitment of DNA demethylation machineries in hematopoietic cells
Takahiro Suzuki,Yuri Shimizu,Erina Furuhata,Shiori Maeda,Mami Kishima,Hajime Nishimura,Saaya Enomoto,Yoshihide Hayashizaki,Harukazu Suzuki +8 more
TL;DR: Evidence is provided that RUNX1 contributes site specificity of DNA dem methylation by recruitment of TET and other demethylation-related enzymes to its binding sites in hematopoietic cells.