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Bogumil Kaczkowski
Researcher at University of Copenhagen
Publications - 37
Citations - 3171
Bogumil Kaczkowski is an academic researcher from University of Copenhagen. The author has contributed to research in topics: Gene expression profiling & Regulation of gene expression. The author has an hindex of 22, co-authored 37 publications receiving 2731 citations. Previous affiliations of Bogumil Kaczkowski include Centre for Life & Technical University of Denmark.
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Journal ArticleDOI
A promoter-level mammalian expression atlas
Alistair R. R. Forrest,Hideya Kawaji,Michael Rehli,J Kenneth Baillie,Michiel J. L. de Hoon,Vanja Haberle,Vanja Haberle,Timo Lassmann,Ivan V. Kulakovskiy,Ivan V. Kulakovskiy,Marina Lizio,Masayoshi Itoh,Robin Andersson,Christopher J. Mungall,Terrence F. Meehan,Sebastian Schmeier,Sebastian Schmeier,Nicolas Bertin,Mette C. Jørgensen,Emmanuel Dimont,Erik Arner,Christian Schmidl,Christian Schmidl,Ulf Schaefer,Yulia A. Medvedeva,Yulia A. Medvedeva,Charles Plessy,Morana Vitezic,Jessica Severin,Colin A. Semple,Yuri Ishizu,Robert Young,Margherita Francescatto,Margherita Francescatto,Intikhab Alam Altschuler,Davide Albanese,Gabriel M. Altschule,Takahiro Arakawa,John A.C. Archer,Peter Arner,Magda Babina,Sarah Rennie,Piotr J. Balwierz,Anthony G Beckhouse,Swati Pradhan-Bhatt,Judith A. Blake,Antje Blumenthal,Beatrice Bodega,Alessandro Bonetti,James Briggs,James Briggs,Frank Brombacher,Frank Brombacher,A. Maxwell Burroughs,Andrea Califano,Carlo Vittorio Cannistraci,Carlo Vittorio Cannistraci,Daniel Carbajo,Yun Chen,Marco Chierici,Yari Ciani,Hans Clevers,Hans Clevers,Emiliano Dalla,Carrie A. Davis,Michael Detmar,Alexander D. Diehl,Taeko Dohi,Finn Drabløs,Albert S.B. Edge,Matthias Edinger,Karl Ekwall,Mitsuhiro Endoh,Hideki Enomoto,Michela Fagiolini,Lynsey Fairbairn,Hai Fang,Mary C. Farach-Carson,Geoffrey J. Faulkner,Alexander V. Favorov,Alexander V. Favorov,Alexander V. Favorov,Malcolm E. Fisher,Martin C. Frith,Rie Fujita,Shiro Fukuda,Cesare Furlanello,Masaaki Furuno,Jun Ichi Furusawa,Teunis B. H. Geijtenbeek,Andrew P. Gibson,Thomas R. Gingeras,Dan Goldowitz,Julian Gough,Sven Guhl,Reto Guler,Reto Guler,Stefano Gustincich,Thomas J. Ha,Masahide Hamaguchi,Mitsuko Hara,Matthias Harbers,Jayson Harshbarger,Akira Hasegawa,Yuki Hasegawa,Takehiro Hashimoto,Meenhard Herlyn,Kelly J Hitchens,Shannan J. Ho Sui,Oliver Hofmann,Ilka Hoof,Fumi Hori,Lukasz Huminiecki,Kei Iida,Tomokatsu Ikawa,Boris R. Jankovic,Hui Jia,Anagha Joshi,Giuseppe Jurman,Bogumil Kaczkowski,Chieko Kai,Kaoru Kaida,Ai Kaiho,Kazuhiro Kajiyama,Mutsumi Kanamori-Katayama,Artem S. Kasianov,Takeya Kasukawa,Shintaro Katayama,Sachi Kato,Shuji Kawaguchi,Hiroshi Kawamoto,Yuki I. Kawamura,Tsugumi Kawashima,Judith S. Kempfle,Tony J. Kenna,Juha Kere,Juha Kere,Levon M. Khachigian,Toshio Kitamura,S. Peter Klinken,Alan J. Knox,Miki Kojima,Soichi Kojima,Naoto Kondo,Haruhiko Koseki,Shigeo Koyasu,Sarah Krampitz,Atsutaka Kubosaki,Andrew T. Kwon,Jeroen F. J. Laros,Weon Ju Lee,Andreas Lennartsson,Kang Li,Berit Lilje,Leonard Lipovich,Alan Mackay-Sim,Ri Ichiroh Manabe,Jessica C. Mar,Benoit Marchand,Anthony Mathelier,Niklas Mejhert,Alison M. Meynert,Yosuke Mizuno,David A. de Lima Morais,Hiromasa Morikawa,Mitsuru Morimoto,Kazuyo Moro,Efthymios Motakis,Hozumi Motohashi,Christine L. Mummery,Mitsuyoshi Murata,Sayaka Nagao-Sato,Yutaka Nakachi,Fumio Nakahara,Toshiyuki Nakamura,Yukio Nakamura,Kenichi Nakazato,Erik van Nimwegen,Noriko Ninomiya,Hiromi Nishiyori,Shohei Noma,Tadasuke Nozaki,Soichi Ogishima,Soichi Ogishima,Naganari Ohkura,Hiroko Ohmiya,Hiroshi Ohno,Mitsuhiro Ohshima,Mariko Okada-Hatakeyama,Yasushi Okazaki,Valerio Orlando,Dmitry A. Ovchinnikov,Arnab Pain,Robert Passier,Margaret Patrikakis,Helena Persson,Silvano Piazza,James Prendergast,Owen J. L. Rackham,Jordan A. Ramilowski,Mamoon Rashid,Timothy Ravasi,Patrizia Rizzu,Marco Roncador,Sugata Roy,Morten Beck Rye,Eri Saijyo,Antti Sajantila,Akiko Saka,Shimon Sakaguchi,Mizuho Sakai,Hiroki Sato,Hironori Satoh,Suzana Savvi,Suzana Savvi,Alka Saxena,Claudio Schneider,Erik Anthony Schultes,Gundula G. Schulze-Tanzil,Anita Schwegmann,Anita Schwegmann,Thierry Sengstag,Guojun Sheng,Hisashi Shimoji,Yishai Shimoni,Jay W. Shin,Christophe Simon,Daisuke Sugiyama,Takaaki Sugiyama,Masanori Suzuki,Naoko Suzuki,Rolf Swoboda,Peter A C 't Hoen,Michihira Tagami,Naoko Takahashi Tagami,Jun Takai,Hiroshi Tanaka,Hideki Tatsukawa,Zuotian Tatum,Mark Thompson,Hiroo Toyoda,Tetsuro Toyoda,Eivind Valen,Marc van de Wetering,Linda M. van den Berg,Roberto Verardo,Dipti Vijayan,Ilya E. Vorontsov,Wyeth W. Wasserman,Shoko Watanabe,Christine A. Wells,Louise N. Winteringham,Ernst J. Wolvetang,Emily J. Wood,Yoko Yamaguchi,Masayuki Yamamoto,Misako Yoneda,Yohei Yonekura,Shigehiro Yoshida,Susan E. Zabierowski,Peter G. Zhang,Xiaobei Zhao,Silvia Zucchelli,Kim M. Summers,Harukazu Suzuki,Carsten O. Daub,Jun Kawai,Peter Heutink,Winston Hide,Tom C. Freeman,Boris Lenhard,Boris Lenhard,Lenhard Vladimir B. Bajic,Martin S. Taylor,Vsevolod J. Makeev,Vsevolod J. Makeev,Vsevolod J. Makeev,Albin Sandelin,David A. Hume,Piero Carninci,Yoshihide Hayashizaki +280 more
TL;DR: For example, the authors mapped transcription start sites (TSSs) and their usage in human and mouse primary cells, cell lines and tissues to produce a comprehensive overview of mammalian gene expression across the human body.
Journal ArticleDOI
MicroRNAs and potential target interactions in psoriasis
John Robert Zibert,Marianne B. Løvendorf,Thomas Litman,Jørgen Olsen,Bogumil Kaczkowski,Lone Skov +5 more
TL;DR: The data indicate several novel important associations for miRNAs in psoriasis and in particular the miR-221/2-TIMP3 target interaction could among others play a role in the psoriatic skin pathogenesis.
Journal ArticleDOI
The Rectal Cancer microRNAome – microRNA Expression in Rectal Cancer and Matched Normal Mucosa
Jochen Gaedcke,Marian Grade,Jordi Camps,Rolf Søkilde,Bogumil Kaczkowski,Aaron J. Schetter,Michael J. Difilippantonio,Curtis C. Harris,B. Michael Ghadimi,Søren Møller,Tim Beissbarth,Thomas Ried,Thomas Litman +12 more
TL;DR: This comprehensive analysis of the rectal cancer miRNAome uncovered novel miRNAs and pathways associated withrectal cancer, and the identification and validation of miR-135b may help to identify novel molecular targets and pathways for therapeutic exploitation.
Journal ArticleDOI
Functional annotation of human long noncoding RNAs via molecular phenotyping
Jordan A. Ramilowski,Chi Wai Yip,Saumya Agrawal,Jen-Chien Chang,Yari Ciani,Ivan V. Kulakovskiy,Mickaël Mendez,Jasmine Li Ching Ooi,John F. Ouyang,Nicholas J. Parkinson,Andreas Petri,Leonie Roos,Jessica Severin,Kayoko Yasuzawa,Imad Abugessaisa,Altuna Akalin,Ivan Antonov,Erik Arner,Alessandro Bonetti,Hidemasa Bono,Beatrice Borsari,Frank Brombacher,Christopher J. F. Cameron,Carlo Vittorio Cannistraci,Ryan Cardenas,Melissa Cardon,Howard Y. Chang,Josée Dostie,Luca Ducoli,Alexander V. Favorov,Alexandre Fort,Diego Garrido,Noa Gil,Juliette Gimenez,Reto Guler,Lusy Handoko,Jayson Harshbarger,Akira Hasegawa,Yuki Hasegawa,Kosuke Hashimoto,Norihito Hayatsu,Peter Heutink,Tetsuro Hirose,Eddie Luidy Imada,Masayoshi Itoh,Bogumil Kaczkowski,Aditi Kanhere,Emily Kawabata,Hideya Kawaji,Tsugumi Kawashima,S. Thomas Kelly,Miki Kojima,Naoto Kondo,Haruhiko Koseki,Tsukasa Kouno,Anton Kratz,Mariola Kurowska-Stolarska,Andrew T. Kwon,Jeffrey T. Leek,Andreas Lennartsson,Marina Lizio,Fernando López-Redondo,Joachim Luginbühl,Shiori Maeda,Vsevolod J. Makeev,Vsevolod J. Makeev,Luigi Marchionni,Yulia A. Medvedeva,Yulia A. Medvedeva,Aki Minoda,Ferenc Müller,Manuel Muñoz-Aguirre,Mitsuyoshi Murata,Hiromi Nishiyori,Kazuhiro R. Nitta,Shuhei Noguchi,Yukihiko Noro,Ramil N. Nurtdinov,Yasushi Okazaki,Valerio Orlando,Denis Paquette,Callum J.C. Parr,Owen J. L. Rackham,Patrizia Rizzu,Diego Fernando Sánchez Martinez,Albin Sandelin,Pillay Sanjana,Colin A. Semple,Youtaro Shibayama,Divya M. Sivaraman,Takahiro Suzuki,Suzannah C. Szumowski,Michihira Tagami,Martin S. Taylor,Chikashi Terao,Malte Thodberg,Supat Thongjuea,Vidisha Tripathi,Igor Ulitsky,Roberto Verardo,Ilya E. Vorontsov,Chinatsu Yamamoto,Robert Young,J Kenneth Baillie,Alistair R. R. Forrest,Roderic Guigó,Michael M. Hoffman,Chung-Chau Hon,Takeya Kasukawa,Sakari Kauppinen,Juha Kere,Boris Lenhard,Claudio Schneider,Harukazu Suzuki,Ken Yagi,Michiel J. L. de Hoon,Jay W. Shin,Piero Carninci +117 more
TL;DR: The largest-to-date lncRNA knockdown data set with molecular phenotyping is disseminated for further exploration and functional roles for ZNF213-AS1 and lnc-KHDC3L-2 are highlighted.
Journal ArticleDOI
Global microRNA analysis of the NCI-60 cancer cell panel
Rolf Søkilde,Bogumil Kaczkowski,Agnieszka Podolska,Susanna Cirera,Jan Gorodkin,Søren Møller,Thomas Litman +6 more
TL;DR: By studying the expression profiles of 955 miRNAs in the NCI-60 cancer cell lines and applying an LNA-enhanced microarray platform, this work found numerous drug–miRNAs pairs, for which the miRNA expression and drug sensitivity profiles were highly correlated and thus represent potential candidates for further investigation of drug resistance and sensitivity mechanisms.