École Normale Supérieure

About: École Normale Supérieure is a other organization based out in Paris, Île-de-France, France. It is known for research contribution in the topics: Population & Catalysis. The organization has 68439 authors who have published 99414 publications receiving 3092008 citations.

Enrichment or depletion of a GO category within a class of genes: which test?

Abstract: Motivation: A number of available program packages determine the significant enrichments and/or depletions of GO categories among a class of genes of interest. Whereas a correct formulation of the problem leads to a single exact null distribution, these GO tools use a large variety of statistical tests whose denominations often do not clarify the underlying P-value computations. Summary: We review the different formulations of the problem and the tests they lead to: the binomial, χ2, equality of two probabilities, Fisher's exact and hypergeometric tests. We clarify the relationships existing between these tests, in particular the equivalence between the hypergeometric test and Fisher's exact test. We recall that the other tests are valid only for large samples, the test of equality of two probabilities and the χ2-test being equivalent. We discuss the appropriateness of one- and two-sided P-values, as well as some discreteness and conservatism issues. Contact: isabelle.rivals@espci.fr Supplementary information: Supplementary data are available at Bioinformatics online.

A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression.

Abstract: A growing number of long nuclear-retained non-coding RNAs (ncRNAs) have recently been described. However, few functions have been elucidated for these ncRNAs. Here, we have characterized the function of one such ncRNA, identified as metastasis-associated lung adenocarcinoma transcript 1 (Malat1). Malat1 RNA is expressed in numerous tissues and is highly abundant in neurons. It is enriched in nuclear speckles only when RNA polymerase II-dependent transcription is active. Knock-down studies revealed that Malat1 modulates the recruitment of SR family pre-mRNA-splicing factors to the transcription site of a transgene array. DNA microarray analysis in Malat1-depleted neuroblastoma cells indicates that Malat1 controls the expression of genes involved not only in nuclear processes, but also in synapse function. In cultured hippocampal neurons, knock-down of Malat1 decreases synaptic density, whereas its over-expression results in a cell-autonomous increase in synaptic density. Our results suggest that Malat1 regulates synapse formation by modulating the expression of genes involved in synapse formation and/or maintenance.

Password-Based authenticated key exchange in the three-party setting

Abstract: Password-based authenticated key exchange are protocols which are designed to be secure even when the secret key or password shared between two users is drawn from a small set of values. Due to the low entropy of passwords, such protocols are always subject to on-line guessing attacks. In these attacks, the adversary may succeed with non-negligible probability by guessing the password shared between two users during its on-line attempt to impersonate one of these users. The main goal of password-based authenticated key exchange protocols is to restrict the adversary to this case only. In this paper, we consider password-based authenticated key exchange in the three-party scenario, in which the users trying to establish a secret do not share a password between themselves but only with a trusted server. Towards our goal, we recall some of the existing security notions for password-based authenticated key exchange protocols and introduce new ones that are more suitable to the case of generic constructions. We then present a natural generic construction of a three-party protocol, based on any two-party authenticated key exchange protocol, and prove its security without making use of the Random Oracle model. To the best of our knowledge, the new protocol is the first provably-secure password-based protocol in the three-party setting.

Systematic variation of the stellar initial mass function in early-type galaxies

Abstract: Much of our knowledge of galaxies comes from analysing the radiation emitted by their stars, which depends on the present number of each type of star in the galaxy. The present number depends on the stellar initial mass function (IMF), which describes the distribution of stellar masses when the population formed, and knowledge of it is critical to almost every aspect of galaxy evolution. More than 50 years after the first IMF determination, no consensus has emerged on whether it is universal among different types of galaxies. Previous studies indicated that the IMF and the dark matter fraction in galaxy centres cannot both be universal, but they could not convincingly discriminate between the two possibilities. Only recently were indications found that massive elliptical galaxies may not have the same IMF as the Milky Way. Here we report a study of the two-dimensional stellar kinematics for the large representative ATLAS(3D) sample of nearby early-type galaxies spanning two orders of magnitude in stellar mass, using detailed dynamical models. We find a strong systematic variation in IMF in early-type galaxies as a function of their stellar mass-to-light ratios, producing differences of a factor of up to three in galactic stellar mass. This implies that a galaxy's IMF depends intimately on the galaxy's formation history

Transport in Out-of-Equilibrium XXZ Chains: Exact Profiles of Charges and Currents.

Abstract: We consider the nonequilibrium time evolution of piecewise homogeneous states in the XXZ spin-1/2 chain, a paradigmatic example of an interacting integrable model. The initial state can be thought of as the result of joining chains with different global properties. Through dephasing, at late times, the state becomes locally equivalent to a stationary state which explicitly depends on position and time. We propose a kinetic theory of elementary excitations and derive a continuity equation which fully characterizes the thermodynamics of the model. We restrict ourselves to the gapless phase and consider cases where the chains are prepared: (1) at different temperatures, (2) in the ground state of two different models, and (3) in the "domain wall" state. We find excellent agreement (any discrepancy is within the numerical error) between theoretical predictions and numerical simulations of time evolution based on time-evolving block decimation algorithms. As a corollary, we unveil an exact expression for the expectation values of the charge currents in a generic stationary state.