Showing papers by "Swiss Federal Institute for Forest, Snow and Landscape Research published in 2006"

Novel methods improve prediction of species' distributions from occurrence data

Abstract: Prediction of species' distributions is central to diverse applications in ecology, evolution and conservation science. There is increasing electronic access to vast sets of occurrence records in museums and herbaria, yet little effective guidance on how best to use this information in the context of numerous approaches for modelling distributions. To meet this need, we compared 16 modelling methods over 226 species from 6 regions of the world, creating the most comprehensive set of model comparisons to date. We used presence-only data to fit models, and independent presence-absence data to evaluate the predictions. Along with well-established modelling methods such as generalised additive models and GARP and BIOCLIM, we explored methods that either have been developed recently or have rarely been applied to modelling species' distributions. These include machine-learning methods and community models, both of which have features that may make them particularly well suited to noisy or sparse information, as is typical of species' occurrence data. Presence-only data were effective for modelling species' distributions for many species and regions. The novel methods consistently outperformed more established methods. The results of our analysis are promising for the use of data from museums and herbaria, especially as methods suited to the noise inherent in such data improve.

Drought as an Inciting Mortality Factor in Scots Pine Stands of the Valais, Switzerland

Abstract: During the 20th century, high mortality rates of Scots pine (Pinus silvestris L.) have been observed over large areas in the Rhone valley (Valais, Switzerland) and in other dry valleys of the European Alps. In this study, we evaluated drought as a possible inciting factor of Scots pine decline in the Valais. Averaged tree-ring widths, standardized tree-ring series, and estimated annual mortality risks were related to a drought index. Correlations between drought indices and standardized tree-ring series from 11 sites showed a moderate association. Several drought years and drought periods could be detected since 1864 that coincided with decreased growth. Although single, extreme drought years had generally a short-term, reversible effect on tree growth, multi-year drought initiated prolonged growth decreases that increased a tree’s long-term risk of death. Tree death occurred generally several years or even decades after the drought. In conclusion, drought has a limiting effect on tree growth and acts as a bottleneck event in triggering Scots pine decline in the Valais.

ALPINE3D: a detailed model of mountain surface processes and its application to snow hydrology

Abstract: Current models of snow cover distribution, soil moisture, surface runoff and river discharge typically have very simple parameterizations of surface processes, such as degree-day factors or single-layer snow cover representation. For the purpose of reproducing catchment runoff, simple snowmelt routines have proven to be accurate, provided that they are carefully calibrated specifically for the catchment they are applied to. The use of more detailed models is, however, useful to understand and quantify the role of individual surface processes for catchment hydrology, snow cover status and soil moisture distribution. We introduce ALPINE3D, a model for the high-resolution simulation of alpine surface processes, in particular snow processes. The model can be driven by measurements from automatic weather stations or by meteorological model outputs. As a preprocessing alternative, specific high-resolution meteorological fields can be created by running a meteorological model. The core three-dimensional ALPINE3D modules consist of a radiation balance model (which uses a view-factor approach and includes shortwave scattering and longwave emission from terrain and tall vegetation) and a drifting snow model solving a diffusion equation for suspended snow and a saltation transport equation. The processes in the atmosphere are thus treated in three dimensions and are coupled to a distributed (in the hydrological sense of having a spatial representation of the catchment properties) one-dimensional model of vegetation, snow and soil (SNOWPACK) using the assumption that lateral exchange is small in these media. The model is completed by a conceptual runoff module. The model can be run with a choice of modules, thus generating more or less detailed surface forcing data as input for runoff generation simulations. The model modules can be run in a parallel (distributed) mode using a GRID infrastructure to allow computationally demanding tasks. In a case study from the Dischma Valley in eastern Switzerland, we demonstrate that the model is able to simulate snow distribution as seen from a NOAA advanced very high-resolution radiometer image. We then analyse the sensitivity of simulated snow cover distribution and catchment runoff to the use of different surface process descriptions. We compare model runoff simulations with runoff data from 10 consecutive years. The quantitative analysis shows that terrain influence on the radiation processes has a significant influence on catchment hydrology dynamics. Neglecting the role of vegetation and the spatial variability of the soil, on the other hand, had a much smaller influence on the runoff generation dynamics. We conclude that ALPINE3D is a valuable tool to investigate surface dynamics in mountains. It is currently used to investigate snow cover dynamics for avalanche warning and permafrost development and vegetation changes under climate change scenarios. It could also serve to test the output of simpler soil–vegetation–atmosphere transfer schemes used in larger scale climate or meteorological models and to create accurate soil moisture assessments for meteorological and flood forecasting. Copyright  2006 John Wiley & Sons, Ltd.

A five-gene phylogeny of Pezizomycotina

Abstract: Pezizomycotina is the largest subphylum of Ascomycota and includes the vast majority of filamen- tous, ascoma-producing species. Here we report the results from weighted parsimony, maximum likelihood and Bayesian phylogenetic analyses of five nuclear loci (SSU rDNA, LSU rDNA, RPB1, RPB2 and EF-1a) from 191 taxa. Nine of the 10 Pezizomycotina classes currently recognized were represented in the sam- pling. These data strongly supported the monophyly of Pezizomycotina, Arthoniomycetes, Eurotiomycetes, Orbiliomycetes and Sordariomycetes. Pezizomycetes and Dothideomycetes also were resolved as mono- phyletic but not strongly supported by the data. Lecanoromycetes was resolved as paraphyletic in parsimony analyses but monophyletic in maximum likelihood and Bayesian analyses. Leotiomycetes was polyphyletic due to exclusion of Geoglossaceae. The two most basal classes of Pezizomycotina were Orbilio- mycetes and Pezizomycetes, both of which comprise species that produce apothecial ascomata. The seven

New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes

Abstract: The Lecanoromycetes includes most of the lichen-forming fungal species (>13 500) and is therefore one of the most diverse class of all Fungi in terms of phenotypic complexity. We report phylogeneti...

Plague dynamics are driven by climate variation

Abstract: The bacterium Yersinia pestis causes bubonic plague. In Central Asia, where human plague is still reported regularly, the bacterium is common in natural populations of great gerbils. By using field data from 1949–1995 and previously undescribed statistical techniques, we show that Y. pestis prevalence in gerbils increases with warmer springs and wetter summers: A 1°C increase in spring is predicted to lead to a >50% increase in prevalence. Climatic conditions favoring plague apparently existed in this region at the onset of the Black Death as well as when the most recent plague pandemic arose in the same region, and they are expected to continue or become more favorable as a result of climate change. Threats of outbreaks may thus be increasing where humans live in close contact with rodents and fleas (or other wildlife) harboring endemic plague.

Regional assessment of N saturation using foliar and root δ15N

Abstract: N saturation induced by atmospheric N deposition can have serious consequences for forest health in many regions. In order to evaluate whether foliar d 15 N may be a robust, regional-scale measure of the onset of N saturation in forest ecosystems, we assembled a large dataset on atmospheric N deposition, foliar and root d 15 N and N concentration, soil C:N, mineralization and nitrification. The dataset included sites in northeastern North America, Colorado, Alaska, southern Chile and Europe. Local drivers of N cycling (net nitrification and mineralization, and forest floor and soil C:N) were more closely coupled with foliar d 15 N than the regional driver of N deposition. Foliar d 15 N increased non-linearly with nitrification:mineralization ratio and decreased with forest floor C:N. Foliar d 15 N was more strongly related to nitrification rates than was foliar N concentration, but concentration was more strongly correlated with N deposition. Root d 15 N was more tightly coupled to forest floor properties than was foliar d 15 N. We observed a pattern of decreasing foliar d 15 N values across the following species: American beech>yellow birch>sugar maple. Other factors that affected foliar d 15 N included species composition and climate. Relationships between foliar d 15 N and soil variables were stronger when analyzed on a species by species basis than when many species were lumped. European sites showed distinct patterns of lower foliar d 15 N, due to the importance of ammonium deposition in this region. Our results suggest that examining d 15 N values of foliage may improve understanding of how forests respond to the cascading effects of N deposition.

Long-distance transport of macroscopic charcoal by an intensive crown fire in the Swiss Alps - implications for fire history reconstruction

Abstract: The correct interpretation of charcoal records in a palaeoecological context requires the understanding of the sources and transport of charcoal particles. Conventionally, it is assumed that macroscopic charcoal particles are not transported far from fires (c. 200 m). Therefore macroscopic charcoal records are used to reconstruct local fire frequencies. However, the general scarcity of empirical and experimental evidence impedes a thorough check of this assumption. In this study we present the first unambiguous evidence of kilometre-scaled macroscopic charcoal transport in Europe. During the hot summer of 2003 an intensive crown fire occurred in Leuk, central Swiss Alps. It affected 300 ha of forest as well as 10 ha of pasture and fallow land. Litter traps and nets had been located approximately 5 km west and east of the burned area. The downwind site in the east (Jeizinen) recorded a strong charcoal fallout at 5.3 km from the fire edge. The observed charcoal influx of fragments with a size up to 1.3 cm reached average values of 0.144 and 0.098 mm 2 /cm 2 per fire (or yr) in five traps and two nets, respectively. These values are comparable with charcoal accumulations measured at only c. 50 m from large fires, suggesting that macroscopic charcoal transport does not decay rapidly to zero with increasing distance from the fire. We suggest a long-distance dispersal model for transport of macroscopic charcoal during large fire events. Reconstructions of local fire regimes may be affected by long-distance transport of macroscopic charcoal, although this problem is mitigated by the tendency of most macroscopic charcoal particles to be deposited within very short distances (B/50 m) from the fire edge.

Pine mistletoe (Viscum album ssp. austriacum) contributes to Scots pine (Pinus sylvestris) mortality in the Rhone valley of Switzerland

Abstract: Summary In recent years unusual high mortality of Scots pine (Pinus sylvestris) has been observed in the Swiss Rhone Valley. The exact causes, however, are not known. At a 2-ha monitoring plot, tree mortality and crown condition have been monitored since 1996. Between 1996 and 2004, 59% of the Scots pines died, most of them following the drought periods 1996–1998 and 2003–2004, while only 15% of the deciduous trees died. Crown transparency, needle discolouration, dead branch percentage, mistletoe (Viscum album ssp. austriacum) rating, Tomicus sp. shoot feeding, male flowering effect, tree stem diameter, crown shading and social tree class assessed in 1998 were used in a logistic regression model to predict tree mortality. Crown transparency, mistletoe rating and percentage of dead branches were found significant in the model and the probability of tree mortality increased with increasing rankings of these parameters. Needle discolouration could be used to substitute dead branch percentage as predictor. While crown transparency increased with mistletoe rating, for trees in the same transparency class, trees with medium and heavy mistletoe infection were two to four times more likely to die than trees with no or only low mistletoe infection. For the surviving trees we found that trees with mistletoes showed a significantly higher increase in transparency in the year following a drought than trees without, while in a drought year the opposite was true. At the beginning of the observations no significant differences in transparency had been found between the trees with and without mistletoe. However, by the end of the observation period trees with mistletoe had significantly higher crown transparency. We conclude that mistletoe infection can be considered as both a predisposing factor for tree death, by increasing needle loss following drought and a contributing factor by increasing water stress during drought.

An Overview of Atmospheric Deposition Chemistry over the Alps: Present Status and Long-term Trends

Abstract: Several research programs monitoring atmospheric deposition have been launched in the Alpine countries in the last few decades. This paper uses data from previous and ongoing projects to: (i) investigate geographical variability in wet deposition chemistry over the Alps; (ii) assess temporal trends of the major chemical variables in response to changes in the atmospheric emission of pollutants; (iii) discuss the potential relationship between the status of atmospheric deposition and its effects on forest ecosystems in the alpine and subalpine area, focusing particularly on nitrogen input. We also present results of studies performed at a local level on specific topics such as long-term changes in lead deposition and the role of occult deposition in total nitrogen input. The analysis performed here highlights the marked geographical variability of atmospheric deposition in the Alpine region. Apart from some evidence of geographically limited effects, due to local sources, no obvious gradients were identified in the major ion deposition. The highest ionic loads were recorded in areas in the foothills of the Alps, such as the pre-alpine area in North-Western Italy and the area of Canton Ticino, Switzerland. Trend analysis shows a widespread decrease in the acidity of precipitation in the last 15–20 years as a consequence of the reduced emission of S compounds. On the other hand, nitrate concentrations in rain have not changed so much, and ammonium has decreased significantly only at the Austrian sampling sites. The deposition of N is still well above the estimated critical loads of nutrient N at some forest sites in the alpine and subalpine areas, thus confirming the critical situation of both terrestrial and aquatic ecosystems regarding N inputs. Existing data highlights the importance of continuously monitoring atmospheric deposition chemistry in the Alpine area, taking account of acidifying elements, nutrients and other pollutants such as heavy metals and organic compounds. There is also a need for unifying sampling and analytical methods in order to obtain comparable data from the different regions of the Alps.

Identifying runoff processes on the plot and catchment scale

Abstract: . Rainfall-runoff models that adequately represent the real hydrological processes and that do not have to be calibrated, are needed in hydrology. Such a model would require information about the runoff processes occurring in a catchment and their spatial distribution. Therefore, the aim of this article is (1) to develop a methodology that allows the delineation of dominant runoff processes (DRP) in the field and with a GIS, and (2) to illustrate how such a map can be used in rainfall-runoff modelling. Soil properties were assessed of 44 soil profiles in two Swiss catchments. On some profiles, sprinkling experiments were performed and soil-water levels measured. With these data, the dominant runoff processes (DRP) were determined using the Scherrer and Naef (2003) process decision scheme. At the same time, a simplified method was developed to make it possible to determine the DRP only on the basis of maps of the soil, topography and geology. In 67% of the soil profiles, the two methods indicated the same processes; in 24% with minor deviations. By transforming the simplified method into a set of rules that could be introduced into a GIS, the distributions of the different DRPs in two catchments could be delineated automatically so that maps of the dominant runoff processes could be produced. These maps agreed well with manually derived maps and field observations. Flood-runoff volumes could be quite accurately predicted on the basis of the rainfall measured and information on the water retention capacity contained in the DRP map. This illustrates the potential of the DRP maps for defining the infiltration parameters used in rainfall-runoff models.

Virtual database: Spatial analysis in a Web-based data management system for distributed ecological data

Abstract: New challenges and requirements for the management of environmental data require improved data interoperability, data integration and data sharing. This paper describes the conceptual design and implementation of the Virtual Database as an integrated environmental and landscape information system which supports corresponding techniques and methods. The Virtual Database consists of a framework for advanced Web-based retrieval, analysis, and visualization of spatially related environmental data based on the integration of distributed data repositories. Existing Internet solutions for disseminating spatial data, such as geoportals or WebGIS, essentially provide functionality for searching, mapping, publishing and limited querying. The main focus of this paper is on extending these techniques by offering spatial analysis capabilities applicable to distributed data sets. The current prototype version of the Virtual Database supports methods for applying spatial filters and performing spatial overlays. The implementation is based on modular and service-oriented software design, open specifications and open source software but also considers proprietary products where appropriate. Our results confirm the strategy of enforcing openness and modularity for reasons of extendibility and maintainability.

Carbon balance of a European mountain bog at contrasting stages of regeneration

Abstract: Carbon dioxide and methane (CH4) fluxes were measured in a cutover bog of the Jura Mountains (France) together with biotic and abiotic variables for two entire vegetation periods in order to compare the carbon balance of the bog at three stages of regeneration Among all factors, air temperature and vegetation index (including leaf area of vascular plants, bryophyte density and bryophyte desiccation) were the two main determinants of ecosystem respiration and gross photosynthesis at light saturation During 2004 and 2005, the vegetated plots acted as carbon sinks Net carbon exchange ranged between 67 and 166 g C m(-2) yr(-1) for the Eriophorum-dominated plots and between 93 and 183 g C m(-2) yr(-1) for the Sphagnum-dominated plots The bare peat plots represented a net carbon source (between -19 and -32 g C m(-2) yr(-1)) Methane fluxes accounted for a very small part of the total carbon efflux (< 2%) The recovery of vegetation in our naturally regenerating bog was beneficial for the carbon sequestration after the relatively short period of 20 yr

Modified micro suction cup/rhizobox approach for the in-situ detection of organic acids in rhizosphere soil solution

Abstract: Root–soil interactions can strongly influence the soil solution chemistry in the rhizosphere. In the present study we propose a modification of the classical rhizobox/micro suction cup system to make it suitable for the collection and analysis of organic acids in the rhizosphere. In order to show the potential of the method, we tested the modified system with Lupinus albus L. as a model plant known to exude large amounts of citrate. The suction cups were installed through the transparent front plate of the rhizoboxes just after the emergence of cluster roots in order to allow optimal localized collection of soil solution. A small dead-volume allowed almost immediate stabilisation with formaldehyde of the sampled soil solutions in the collection container to prevent microbial degradation. The concentrations of organic acids were significantly larger in the rhizosphere soil solution of active cluster roots of Lupinus albus L. than in the bulk soil solution (about 400 µM of citrate versus <0.05 µM). We were able to follow the exudation process in-situ, which occurred during 2–3 days. Also the concentrations of other organic acids and inorganic anions differed between the bulk soil and the rhizosphere of cluster roots, normal roots, and nodules.

Spatial organization in the step-pool structure of a steep mountain stream (Vogelbach, Switzerland)

Abstract: [1] Spatial organization in the step-pool structure of a 1.58 km long section of the Vogelbach, a steep mountain stream (average channel bed slope 0.17 m/m) in the Alpthal basin, Switzerland, is analyzed to evaluate the extent of randomness in the occurrence of steps and to isolate the potential hydraulic and topographic controls on step placement. Statistics of the observed step sequence are compared with those of random sequences generated by permutation from the observed step height distribution. Hydraulic and topographic controls on step placement are analyzed from step length and steepness distributions and relations between mean step properties and step height and channel gradient for both observed and random sequences. Results show that (1) observed step length distributions are statistically significantly different from randomly generated sequences, (2) step steepness is significantly different in observed data because of a positive correlation between mean step length and height and it remains fairly constant for all step sizes, (3) spatial organization in steps does not extend far beyond the nearest step, and (4) the influence of channel gradient on step properties is insignificant and highly variable, indicating that hydraulic rather than topographic controls are dominant for step placement in this stream. Although the Vogelbach is a steep stream on the boundary between a cascading and step-pool morphology where we would expect randomness to dominate, spatial organization was nevertheless detected in many important aspects of the step-pool geometry.

Community structure and diversity of bryophytes and vascular plants in abandoned fen meadows

Abstract: We examined effects of abandonment on species diversity and species composition by comparing 21 calcareous fen meadows in the pre-alpine zone of central and northeastern Switzerland. Meadows were divided into three classes of successional stages (mown: annually mown in late summer, young fallow: 4 –15 years, and old fallow: >15 years of abandonment). In each fen, we measured litter mass in four 20 cm20 cm plots, as well as (aboveground) biomass and species density (number of species per unit area) of bryophytes and vascular plants. Bryophyte biomass was reduced in abandoned fens, whereas litter mass and aboveground biomass of vascular plants increased. Species density of both taxonomic groups was lower in abandoned than in mown fens. Young and old successional stages were not different except for bryophytes, for which old successional stages had higher species density than young stages. We used litter mass and aboveground biomass of vascular plants as covariables in analyses of variance to reveal their effects on species density of both taxonomic groups. For bryophytes, litter mass was more important than vascular plant biomass in explaining variance of species density. This indicates severe effects of burying by litter on bryophyte species density. For species density of vascular plants, both vascular plant biomass and litter mass were of similar importance in explaining the decreased species density. Canonical correspondence analyses showed that abandonment also had an effect on species composition of both bryophytes and vascular plants. However, young and old successional stages were not different indicating fast initial changes after abandonment, but slow secondary succession afterwards. Furthermore, indicator species analysis showed that there was no establishment of new species after abandonment that might dramatically alter fen communities. Re-introduction of mowing as a nature conservation strategy may thus be very promising – even for old fallows.

Pathways and dynamics of 15NO3− and 15NH4+ applied in a mountain Picea abies forest and in a nearby meadow in central Switzerland

Abstract: To evaluate the pathways and dynamics of inorganic nitrogen (N) deposition in previously N-limited ecosystems, field additions of 15 N tracers were conducted in two mountain ecosystems, a forest dominated by Norway spruce ( Picea abies ) and a nearby meadow, at the Alptal research site in central Switzerland. This site is moderately impacted by N from agricultural and combustion sources, with a bulk atmospheric deposition of 12 kg N ha −1 y −1 equally divided between NH 4 + and NO 3 − . Pulses of 15 NH 4 + and 15 NO 3 − were applied separately as tracers on plots of 2.25 m 2 . Several ecosystem pools were sampled at short to longer-term intervals (from a few hours to 1 year), above and belowground biomass (excluding trees), litter layer, soil LF horizon (approx. 5–0 cm), A horizon (approx. 0–5 cm) and gleyic B horizon (5–20 cm). Furthermore, extractable inorganic N, and microbial N pools were analysed in the LF and A horizons. Tracer recovery patterns were quite similar in both ecosystems, with most of the tracer retained in the soil pool. At the short-term (up to 1 week), up to 16% of both tracers remained extractable or entered the microbial biomass. However, up to 30% of the added 15 NO 3 − was immobilised just after 1 h, and probably chemically bound to soil organic matter. 16% of the NH 4 + tracer was also immobilised within hours, but it is not clear how much was bound to soil organic matter or fixed between layers of illite-type clay. While the extractable and microbial pools lost 15 N over time, a long-term increase in 15 N was measured in the roots. Otherwise, differences in recovery a few hours after labelling and 1 year later were surprisingly small. Overall, more NO 3 − tracer than NH 4 + tracer was recovered in the soil. This was due to a strong aboveground uptake of the deposited NH 4 + by the ground vegetation, especially by mosses.

Influence of Fruit Treatments on Perishability During Cold Storage of Sweet Chestnuts

Abstract: With a view to enhancing the quality of local chestnut in southern Switzerland, the impact of three treatments [‘soaking’, ‘cold bath’ (hydrotherapy) and ‘warm bath’ (thermo-hydrotherapy)] on the qualitative, chemical and sensory characteristics of the nuts during 90 days of cold storage was evaluated. Weight and water content decreased significantly with increasing duration of storage. Starch content decreased following a negative logistic trend. Sucrose, however, increased steeply according to a monomolecular trend and was significantly higher between 0 and 60 days of storage in the soaked chestnuts than in the cold-bath treated nuts. The mean proportion of mouldy fruit remained constant at 27% for the warm-bath treated nuts and increased from 16 to 30% for the cold-bath treated fruit and from 28 to 63% for the soaked nuts during the 90 days of cold storage. The most frequently isolated moulds were Ciboria batschiana, Penicillium spp. and Mucor hiemalis. Warm and cold baths were successful in eliminating the larvae of Cydia splendana but the cold bath was inadequate to control Curculio elephas. Cold bath significantly reduced the sensory qualities (sweetness, aroma, texture) of the nuts, but made them easier to peel, as did the warm bath. Copyright © 2006 Society of Chemical Industry

One hundred years of mountain hydrology in Switzerland by the WSL

Abstract: In 1903 the Swiss Federal Research Institute WSL started its first forest hydrology measurements with the aim to deliver a sound scientific basis for the implementation of new forest legislation introduced in Switzerland in 1876. This legislation was triggered by several large floods that occurred in Switzerland, for which a major cause was widely seen as the poor condition of forests at that time. Consequently, hydrologic research at WSL first focused on the influence of forests on floods. In the second half of the 20th century, other hydrological issues such as water quality, snow hydrology and sediment transport complemented the hydrologic research at WSL. Some recent results of this work are presented in three papers joining this introductory paper to mark the 100th anniversary of hydrologic research at WSL. Copyright © 2006 John Wiley & Sons, Ltd.