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Journal ArticleDOI

Clinical epigenetics: seizing opportunities for translation.

María Berdasco, +1 more
- 01 Feb 2019 - 
- Vol. 20, Iss: 2, pp 109-127
TLDR
Beyond helping to understand disease biology, clinical epigenetics is being incorporated into patient management in oncology, as well as being explored for clinical applicability for other human pathologies such as neurological and infectious diseases and immune system disorders.
Abstract
Biomarker discovery and validation are necessary for improving the prediction of clinical outcomes and patient monitoring. Despite considerable interest in biomarker discovery and development, improvements in the range and quality of biomarkers are still needed. The main challenge is how to integrate preclinical data to obtain a reliable biomarker that can be measured with acceptable costs in routine clinical practice. Epigenetic alterations are already being incorporated as valuable candidates in the biomarker field. Furthermore, their reversible nature offers a promising opportunity to ameliorate disease symptoms by using epigenetic-based therapy. Thus, beyond helping to understand disease biology, clinical epigenetics is being incorporated into patient management in oncology, as well as being explored for clinical applicability for other human pathologies such as neurological and infectious diseases and immune system disorders.

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Citations
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Journal ArticleDOI

Single cell cancer epigenetics.

TL;DR: In this paper , a review of single cell-sequencing methodologies for cancer is presented, focusing on different aspects of epigenetics (DNA methylation, chromatin accessibility, histone modifications, DNA-protein interactions, and chromatin 3D architecture) at the single cell level.
Journal ArticleDOI

RNA N6-Methyladenosine Regulator-Mediated Methylation Modifications Pattern and Immune Infiltration Features in Glioblastoma.

TL;DR: Wang et al. as mentioned in this paper investigated the relationship between m6A modification patterns and tumor microenvironment immune cell infiltration, through which they could comprehensively understand resistance to multiple therapies in GBM, as well as accomplish precise risk stratification according to M6A-related signatures.
Journal ArticleDOI

Epigenetic and breast cancer therapy: Promising diagnostic and therapeutic applications.

TL;DR: Light is shed on the current state of epigenetics research in the diagnosis and management of breast cancer and the role of epigenetic alterations in the mechanism of BC pathogenesis and its hallmarks include drug resistance and stemness features.
Journal ArticleDOI

USP9X-mediated KDM4C deubiquitination promotes lung cancer radioresistance by epigenetically inducing TGF-β2 transcription.

TL;DR: Wang et al. as mentioned in this paper showed that deubiquitinase USP9X is a critical binding partner that deubiiquitinates and stabilizes KDM4C and showed that depletion of USP 9X impairs TGF-β2/Smad signaling and radioresistance.
References
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Journal ArticleDOI

Integrative analysis of 111 reference human epigenomes

Anshul Kundaje, +123 more
- 19 Feb 2015 - 
TL;DR: It is shown that disease- and trait-associated genetic variants are enriched in tissue-specific epigenomic marks, revealing biologically relevant cell types for diverse human traits, and providing a resource for interpreting the molecular basis of human disease.

Integrative analysis of 111 reference human epigenomes

TL;DR: In this article, the authors describe the integrative analysis of 111 reference human epigenomes generated as part of the NIH Roadmap Epigenomics Consortium, profiled for histone modification patterns, DNA accessibility, DNA methylation and RNA expression.
Journal ArticleDOI

Non-coding RNAs in human disease

TL;DR: Dysregulation of these ncRNAs is being found to have relevance not only to tumorigenesis, but also to neurological, cardiovascular, developmental and other diseases, and there is great interest in therapeutic strategies to counteract these perturbations.
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