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Journal ArticleDOI

Distinction of lymphoid and myeloid clonal hematopoiesis

TLDR
In this article, the authors performed an integrated analysis of gene mutations associated with hematologic malignancies detected in hematopoietic cells of healthy individuals, referred to as CH of indeterminate potential (CHIP), and found that myeloid and lymphoid gene mutations were associated with risk of lineage-specific malignancy.
Abstract
Clonal hematopoiesis (CH) results from somatic genomic alterations that drive clonal expansion of blood cells. Somatic gene mutations associated with hematologic malignancies detected in hematopoietic cells of healthy individuals, referred to as CH of indeterminate potential (CHIP), have been associated with myeloid malignancies, while mosaic chromosomal alterations (mCAs) have been associated with lymphoid malignancies. Here, we analyzed CHIP in 55,383 individuals and autosomal mCAs in 420,969 individuals with no history of hematologic malignancies in the UK Biobank and Mass General Brigham Biobank. We distinguished myeloid and lymphoid somatic gene mutations, as well as myeloid and lymphoid mCAs, and found both to be associated with risk of lineage-specific hematologic malignancies. Further, we performed an integrated analysis of somatic alterations with peripheral blood count parameters to stratify the risk of incident myeloid and lymphoid malignancies. These genetic alterations can be readily detected in clinical sequencing panels and used with blood count parameters to identify individuals at high risk of developing hematologic malignancies. Genomic analyses in the UK Biobank show that clonal hematopoiesis of indeterminate potential in the lymphoid lineage is associated with a higher risk of developing lymphoid malignancies

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ESMO recommendations on the use of circulating tumour DNA assays for patients with cancer: a report from the ESMO Precision Medicine Working Group.

TL;DR: Alix-Panabières et al. as discussed by the authors reviewed analytical and clinical validity and utility of circulating tumour DNA (ctDNA) assays and made recommendations for reporting of results, future development of ctDNA assays, and future clinical research are made.
Journal ArticleDOI

Genome-wide analyses of 200,453 individuals yield new insights into the causes and consequences of clonal hematopoiesis

TL;DR: The authors analyzed genetic data from 200,453 UK Biobank participants to map the landscape of inherited predisposition to CH, increasing the number of germline associations with CH in European-ancestry populations from 4 to 14.
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Genetics of smoking and risk of clonal hematopoiesis

TL;DR: In this paper , the role of smoking in mCAs and CHIP was investigated using two complementary analyses, using an observational study design among UK Biobank participants, and using two-sample Mendelian randomization, smoking was strongly associated with mCA but not with CHIP.
References
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Journal ArticleDOI

The Sequence Alignment/Map format and SAMtools

TL;DR: SAMtools as discussed by the authors implements various utilities for post-processing alignments in the SAM format, such as indexing, variant caller and alignment viewer, and thus provides universal tools for processing read alignments.
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The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data

TL;DR: The cBio Cancer Genomics Portal significantly lowers the barriers between complex genomic data and cancer researchers who want rapid, intuitive, and high-quality access to molecular profiles and clinical attributes from large-scale cancer genomics projects and empowers researchers to translate these rich data sets into biologic insights and clinical applications.
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The mutational constraint spectrum quantified from variation in 141,456 humans

TL;DR: A catalogue of predicted loss-of-function variants in 125,748 whole-exome and 15,708 whole-genome sequencing datasets from the Genome Aggregation Database (gnomAD) reveals the spectrum of mutational constraints that affect these human protein-coding genes.
Journal ArticleDOI

Age-Related Clonal Hematopoiesis Associated with Adverse Outcomes

TL;DR: Age-related clonal hematopoiesis is a common condition that is associated with increases in the risk of hematologic cancer and in all-cause mortality, with the latter possibly due to an increased risk of cardiovascular disease.
Related Papers (5)
Trending Questions (2)
What are the differences between the myeloid and lymphoid lineages in leukocyte maturation?

Myeloid clonal hematopoiesis is linked to myeloid malignancies, while lymphoid clonal hematopoiesis is associated with lymphoid malignancies, indicating lineage-specific risks in hematologic malignancies.

Which cells from haemopoeisis are lymphoid and myeloid?

Lymphoid cells and myeloid cells are distinguished in clonal hematopoiesis, with lymphoid mutations linked to lymphoid malignancies and myeloid mutations associated with myeloid malignancies, as per the research findings.