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Open AccessJournal ArticleDOI

Laboratory Diagnosis of COVID-19: Current Issues and Challenges.

TLDR
In the preanalytical stage, collecting the proper respiratory tract specimen at the right time from the right anatomic site is essential for a prompt and accurate molecular diagnosis of COVID-19, and real-time reverse transcription-PCR assays remain the molecular test of choice for the etiologic diagnosis of SARS-CoV-2 infection while antibody-based techniques are being introduced as supplemental tools.
Abstract
The COVID-19 outbreak has had a major impact on clinical microbiology laboratories in the past several months. This commentary covers current issues and challenges for the laboratory diagnosis of infections caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). In the preanalytical stage, collecting the proper respiratory tract specimen at the right time from the right anatomic site is essential for a prompt and accurate molecular diagnosis of COVID-19. Appropriate measures are required to keep laboratory staff safe while producing reliable test results. In the analytic stage, real-time reverse transcription-PCR (RT-PCR) assays remain the molecular test of choice for the etiologic diagnosis of SARS-CoV-2 infection while antibody-based techniques are being introduced as supplemental tools. In the postanalytical stage, testing results should be carefully interpreted using both molecular and serological findings. Finally, random-access, integrated devices available at the point of care with scalable capacities will facilitate the rapid and accurate diagnosis and monitoring of SARS-CoV-2 infections and greatly assist in the control of this outbreak.

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Journal ArticleDOI

rRT-PCR for SARS-CoV-2: Analytical considerations.

TL;DR: In this paper, the authors reviewed the potential sources of error and efforts to mitigate are reviewed with an emphasis on the analytical phase with the focus on the pre-analytical (sampling, storage and processing), analytical (RNA extraction, cDNA synthesis and amplification) and post-analysis (interpretation and analysis and test reporting).
Journal ArticleDOI

[ANMCO Position paper: Pulmonary circulation diseases and COVID-19]

TL;DR: The high incidence of venous thromboembolism in COVID-19 patients admitted to the intensive care unit and the autoptic findings of in situ micro-thrombosis at the pulmonary vascular level suggest that in this disease coagulopathy is driven towards a hyper-thROMbogenic state.
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Plasma procurement and plasma product safety in light of the COVID‐19 pandemic from the perspective of the plasma industry

TL;DR: There is a need for more plasma to be collected around the world to meet the growing need for safe and efficacious plasma‐derived therapies, which requires outdated regulatory and policy restrictions to be realigned with current scientific evidence.
Journal ArticleDOI

Designing and Interpreting Coronavirus Disease 2019 (COVID-19) Diagnostics: Mathematics, Visual Logistics, and Low Prevalence.

TL;DR: Understanding low prevalence impact will help healthcare providers meet COVID-19 needs for effective testing, and clear expectations, high sensitivity and specificity, and manufacturer disclosure will facilitate excellence of tests.
Journal ArticleDOI

Confidence intervals for the COVID-19 neutralizing antibody retention rate in the Korean population

TL;DR: This paper reviews the importance of antibody studies and presents the 95% confidence intervals COVID-19 antibody rate for the Korean population using two recently performed antibody tests in Korea, and finds that the Wald method gives the narrowest interval among all Asymptotic methods whereas mid p-value gives the widest among all Exact methods and Jeffrey’s method givesThe narrowest from Bayesian method.
References
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Journal ArticleDOI

A pneumonia outbreak associated with a new coronavirus of probable bat origin

TL;DR: Identification and characterization of a new coronavirus (2019-nCoV), which caused an epidemic of acute respiratory syndrome in humans in Wuhan, China, and it is shown that this virus belongs to the species of SARSr-CoV, indicates that the virus is related to a bat coronav virus.
Journal ArticleDOI

A new coronavirus associated with human respiratory disease in China.

TL;DR: Phylogenetic and metagenomic analyses of the complete viral genome of a new coronavirus from the family Coronaviridae reveal that the virus is closely related to a group of SARS-like coronaviruses found in bats in China.
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