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Open AccessJournal ArticleDOI

Laboratory Diagnosis of COVID-19: Current Issues and Challenges.

TLDR
In the preanalytical stage, collecting the proper respiratory tract specimen at the right time from the right anatomic site is essential for a prompt and accurate molecular diagnosis of COVID-19, and real-time reverse transcription-PCR assays remain the molecular test of choice for the etiologic diagnosis of SARS-CoV-2 infection while antibody-based techniques are being introduced as supplemental tools.
Abstract
The COVID-19 outbreak has had a major impact on clinical microbiology laboratories in the past several months. This commentary covers current issues and challenges for the laboratory diagnosis of infections caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). In the preanalytical stage, collecting the proper respiratory tract specimen at the right time from the right anatomic site is essential for a prompt and accurate molecular diagnosis of COVID-19. Appropriate measures are required to keep laboratory staff safe while producing reliable test results. In the analytic stage, real-time reverse transcription-PCR (RT-PCR) assays remain the molecular test of choice for the etiologic diagnosis of SARS-CoV-2 infection while antibody-based techniques are being introduced as supplemental tools. In the postanalytical stage, testing results should be carefully interpreted using both molecular and serological findings. Finally, random-access, integrated devices available at the point of care with scalable capacities will facilitate the rapid and accurate diagnosis and monitoring of SARS-CoV-2 infections and greatly assist in the control of this outbreak.

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Citations
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Journal ArticleDOI

Prospective Comparison of Saliva and Nasopharyngeal Swab Sampling for Mass Screening for COVID-19

TL;DR: In this paper, Saliva samples have advantages regarding ease and painlessness of collection, which does not require trained staff and may allow self-sampling, which is a useful and acceptable tool to identify infectious persons in mass screening contexts, a strategically important task for contact tracing and isolation.
Journal ArticleDOI

Diagnostic performance of rapid antigen test for COVID-19 and the effect of viral load, sampling time, subject's clinical and laboratory parameters on test accuracy.

TL;DR: In this article, the authors evaluated the diagnostic performance of the rapid antigen test (RAT) against reverse transcriptase quantitative real-time PCR (RT-qPCR) in eighty-three swabs collected from COVID-19 suspected individuals showing various demographic features, clinical and radiological findings.
Journal ArticleDOI

Proof of concept for real-time detection of SARS CoV-2 infection with an electronic nose.

TL;DR: In this paper, a generic eNose was used to detect SARS CoV-2 infection at a level significantly better than chance, for both symptomatic and non-symptomatic participants.
Proceedings ArticleDOI

COVID-19 Identification from Chest X-Rays

TL;DR: The best performing models among the evaluated ones were the DenseNet, ResNet and Xception models, with the results indicating the possibility of identifying COVID-19 positive cases from chest X-ray images.
Journal ArticleDOI

Advancements in detection of SARS-CoV-2 infection for confronting COVID-19 pandemics

TL;DR: In this paper , the availability of specific and reliable assays for the SARS-CoV-2 viral genome and its proteins is essential to identify the infection in suspected populations, make diagnoses in symptomatic or asymptomatic individuals, and determine clearance of the virus after the infection.
References
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Journal ArticleDOI

A pneumonia outbreak associated with a new coronavirus of probable bat origin

TL;DR: Identification and characterization of a new coronavirus (2019-nCoV), which caused an epidemic of acute respiratory syndrome in humans in Wuhan, China, and it is shown that this virus belongs to the species of SARSr-CoV, indicates that the virus is related to a bat coronav virus.
Journal ArticleDOI

A new coronavirus associated with human respiratory disease in China.

TL;DR: Phylogenetic and metagenomic analyses of the complete viral genome of a new coronavirus from the family Coronaviridae reveal that the virus is closely related to a group of SARS-like coronaviruses found in bats in China.
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