The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems
Jan Pawlowski,Mary Kelly-Quinn,Florian Altermatt,Laure Apothéloz-Perret-Gentil,Pedro Beja,Angela Boggero,Ángel Borja,Agnès Bouchez,Tristan Cordier,Isabelle Domaizon,Maria João Feio,Ana Filipa Filipe,Riccardo Fornaroli,Wolfram Graf,Jelger Herder,Berry van der Hoorn,J. Iwan Jones,Marketa Sagova-Mareckova,Christian Moritz,José Barquín,Jeremy J. Piggott,Maurizio Pinna,Frédéric Rimet,B. Rinkevich,Carla Sousa-Santos,Valeria Specchia,Rosa Trobajo,Valentin Vasselon,Simon Vitecek,Jonas Zimmerman,Alexander M. Weigand,Florian Leese,Maria Kahlert +32 more
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TLDR
The main advantages and pitfalls of metabarcoding approaches to assess parameters such as richness, abundance, taxonomic composition and species ecological values, to be used for calculation of biotic indices are discussed.About:
This article is published in Science of The Total Environment.The article was published on 2018-10-01 and is currently open access. It has received 304 citations till now.read more
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Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA
TL;DR: In this paper, the basic methodology, benefits, and concerns of eDNA metabarcoding, and systematically cover the applications of the method in global ecology thus far, including biodiversity monitoring across all habitats and taxonomic groups, ancient ecosystem reconstruction, plant-pollinator interactions, diet analysis, invasive species detection, pollution responses, and air quality monitoring.
Journal ArticleDOI
Protecting and restoring Europe's waters: An analysis of the future development needs of the Water Framework Directive
Laurence Carvalho,Eleanor B. Mackay,Ana Cristina Cardoso,Annette Baattrup-Pedersen,Sebastian Birk,Kirsty Blackstock,Gábor Borics,Ángel Borja,Christian K. Feld,Maria Teresa Ferreira,Lidija Globevnik,Bruna Grizzetti,Sarah Hendry,Daniel Hering,Martyn Kelly,Sindre Langaas,Kristian Meissner,Yiannis Panagopoulos,Ellis Penning,Josselin Rouillard,Sergi Sabater,Ursula Schmedtje,Bryan M. Spears,Markus Venohr,Wouter van de Bund,Anne Lyche Solheim +25 more
TL;DR: This analysis highlights that there is great potential to enhance assessment schemes through strategic design of monitoring networks and innovation, such as earth observation, and further integrate with other sectoral policies.
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DNA metabarcoding-Need for robust experimental designs to draw sound ecological conclusions.
Lucie Zinger,Aurélie Bonin,Inger Greve Alsos,Miklós Bálint,Holly M. Bik,Frédéric Boyer,Anthony A. Chariton,Simon Creer,Eric Coissac,Bruce E. Deagle,Marta De Barba,Ian A. Dickie,Alex J. Dumbrell,Gentile Francesco Ficetola,Gentile Francesco Ficetola,Noah Fierer,Noah Fierer,Luca Fumagalli,M. Thomas P. Gilbert,M. Thomas P. Gilbert,Simon N. Jarman,Simon N. Jarman,Ari Jumpponen,Håvard Kauserud,Ludovic Orlando,Ludovic Orlando,Johan Pansu,Johan Pansu,Johan Pansu,Jan Pawlowski,Leho Tedersoo,Philip Francis Thomsen,Eske Willerslev,Eske Willerslev,Eske Willerslev,Pierre Taberlet +35 more
TL;DR: This book is dedicated to the victims of the Paris terror attacks of 22 July 1997, which claimed the lives of 129 people and injured more than 200 others.
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Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
Tristan Cordier,Laura Alonso-Sáez,Laure Apothéloz-Perret-Gentil,Eva Aylagas,David A. Bohan,Agnès Bouchez,Anthony A. Chariton,Simon Creer,Larissa Frühe,François Keck,Nigel Keeley,Olivier Laroche,Florian Leese,Xavier Pochon,Xavier Pochon,Thorsten Stoeck,Jan Pawlowski,Jan Pawlowski,Anders Lanzén +18 more
TL;DR: This paper aims to compare, review and discuss the strengths and limitations of four general implementation strategies of environmental genomics for monitoring, and proposes a roadmap for the implementation of environmentalgenomics into routine monitoring programmes that leverage recent analytical advancements.
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