Showing papers on "Organic matter published in 2011"

Deep soil organic matter—a key but poorly understood component of terrestrial C cycle

Abstract: Despite their low carbon (C) content, most subsoil horizons contribute to more than half of the total soil C stocks, and therefore need to be considered in the global C cycle. Until recently, the properties and dynamics of C in deep soils was largely ignored. The aim of this review is to synthesize literature concerning the sources, composition, mechanisms of stabilisation and destabilization of soil organic matter (SOM) stored in subsoil horizons. Organic C input into subsoils occurs in dissolved form (DOC) following preferential flow pathways, as aboveground or root litter and exudates along root channels and/or through bioturbation. The relative importance of these inputs for subsoil C distribution and dynamics still needs to be evaluated. Generally, C in deep soil horizons is characterized by high mean residence times of up to several thousand years. With few exceptions, the carbon-to-nitrogen (C/N) ratio is decreasing with soil depth, while the stable C and N isotope ratios of SOM are increasing, indicating that organic matter (OM) in deep soil horizons is highly processed. Several studies suggest that SOM in subsoils is enriched in microbial-derived C compounds and depleted in energy-rich plant material compared to topsoil SOM. However, the chemical composition of SOM in subsoils is soil-type specific and greatly influenced by pedological processes. Interaction with the mineral phase, in particular amorphous iron (Fe) and aluminum (Al) oxides was reported to be the main stabilization mechanism in acid and near neutral soils. In addition, occlusion within soil aggregates has been identified to account for a great proportion of SOM preserved in subsoils. Laboratory studies have shown that the decomposition of subsoil C with high residence times could be stimulated by addition of labile C. Other mechanisms leading to destabilisation of SOM in subsoils include disruption of the physical structure and nutrient supply to soil microorganisms. One of the most important factors leading to protection of SOM in subsoils may be the spatial separation of SOM, microorganisms and extracellular enzyme activity possibly related to the heterogeneity of C input. As a result of the different processes, stabilized SOM in subsoils is horizontally stratified. In order to better understand deep SOM dynamics and to include them into soil C models, quantitative information about C fluxes resulting from C input, stabilization and destabilization processes at the field scale are necessary.

Dissolved Organic Matter: Biogeochemistry, Dynamics, and Environmental Significance in Soils

Abstract: Dissolved organic matter (DOM) is defined as the organic matter fraction in solution that passes through a 0.45 μm filter. Although DOM is ubiquitous in terrestrial and aquatic ecosystems, it represents only a small proportion of the total organic matter in soil. However, DOM, being the most mobile and actively cycling organic matter fraction, influences a spectrum of biogeochemical processes in the aquatic and terrestrial environments. Biological fixation of atmospheric CO 2 during photosynthesis by higher plants is the primary driver of global carbon cycle. A major portion of the carbon in organic matter in the aquatic environment is derived from the transport of carbon produced in the terrestrial environment. However, much of the terrestrially produced DOM is consumed by microbes, photo degraded, or adsorbed in soils and sediments as it passes to the ocean. The majority of DOM in terrestrial and aquatic environments is ultimately returned to atmosphere as CO 2 through microbial respiration, thereby renewing the atmospheric CO 2 reserve for photosynthesis. Dissolved organic matter plays a significant role in influencing the dynamics and interactions of nutrients and contaminants in soils and microbial functions, thereby serving as a sensitive indicator of shifts in ecological processes. This chapter aims to highlight knowledge on the production of DOM in soils under different management regimes, identify its sources and sinks, and integrate its dynamics with various soil processes. Understanding the significance of DOM in soil processes can enhance development of strategies to mitigate DOM-induced environmental impacts. This review encourages greater interactions between terrestrial and aquatic biogeochemists and ecologists, which is essential for unraveling the fundamental biogeochemical processes involved in the synthesis of DOM in terrestrial ecosystem, its subsequent transport to aquatic ecosystem, and its role in environmental sustainability, buffering of nutrients and pollutants (metal(loid)s and organics), and the net effect on the global carbon cycle.

Long-Term Effects of Organic Amendments on Soil Fertility

Abstract: Common agricultural practices such as excessive use of agro-chemicals, deep tillage and luxury irrigation have degraded soils, polluted water resources and contaminated the atmosphere. There is increasing concern about interrelated environmental problems such as soil degradation, desertification, erosion, and accelerated greenhouse effects and climate change. The decline in organic matter content of many soils is becoming a major process of soil degradation, particularly in European semi-arid Mediterranean regions. Degraded soils are not fertile and thus cannot maintain sustainable production. At the same time, the production of urban and industrial organic waste materials is widespread. Therefore, strategies for recycling such organic waste in agriculture must be developed. Here, we review long-term experiments (3–60 years) on the effects of organic amendments used both for organic matter replenishment and to avoid the application of high levels of chemical fertilizers. The major points of our analysis are: (1) many effects, e.g. carbon sequestration in the soil and possible build-up of toxic elements, evolve slowly, so it is necessary to refer to long-term trials. (2) Repeated application of exogenous organic matter to cropland led to an improvement in soil biological functions. For instance, microbial biomass carbon increased by up to 100% using high-rate compost treatments, and enzymatic activity increased by 30% with sludge addition. (3) Long-lasting application of organic amendments increased organic carbon by up to 90% versus unfertilized soil, and up to 100% versus chemical fertilizer treatments. (4) Regular addition of organic residues, particularly the composted ones, increased soil physical fertility, mainly by improving aggregate stability and decreasing soil bulk density. (5) The best agronomic performance of compost is often obtained with the highest rates and frequency of applications. Furthermore, applying these strategies, there were additional beneficial effects such as the slow release of nitrogen fertilizer. (6) Crop yield increased by up to 250% by long-term applications of high rates of municipal solid waste compost. Stabilized organic amendments do not reduce the crop yield quality, but improve it. (7) Organic amendments play a positive role in climate change mitigation by soil carbon sequestration, the size of which is dependent on their type, the rates and the frequency of application. (8) There is no tangible evidence demonstrating negative impacts of heavy metals applied to soil, particularly when high-quality compost was used for long periods. (9) Repeated application of composted materials enhances soil organic nitrogen content by up to 90%, storing it for mineralization in future cropping seasons, often without inducing nitrate leaching to groundwater.

Thermogravimetric analysis as a new method to determine the lignocellulosic composition of biomass.

Abstract: Biomass energy uses organic matter such as wood or plants - lignocellulosic biomass - for creating heat, generating electricity and producing green oil for cars. Modern biomass energy recycles organic leftovers from forestry and agriculture, like corn stovers, rice husks, wood waste and pressed sugar cane, or uses special, fast-growing “energy crops” like willow and switchgrass, as fuel. Biomass is composed of three major components: cellulose, hemicelluloses, and lignin. Their differences in chemical structures lead to different chemical reactivities, making the relative composition in cellulose, hemicelluloses and lignin in the biomass a crucial factor for process design. In this paper thermogravimetric analysis is investigated as a new method to obtain lignin, hemicellulose and α-cellulose contents in biomass. It is shown that this alternative method lead to comparable results than common methods used for the determination of the α-cellulose content, with an enhancement of the accuracy in the determination of the hemicellulose content. Unfortunately, this method cannot be adopted for the determination of the lignin amount.

The priming potential of biochar products in relation to labile carbon contents and soil organic matter status

Abstract: Recognition of biochar as a potential tool for long-term carbon sequestration with additional agronomic benefits is growing However, the functionality of biochar in soil and the response of soils to biochar inputs are poorly understood It has been suggested, for example, that biochar additions to soils could prime for the loss of native organic carbon, undermining its sequestration potential This work examines the priming potential of biochar in the context of its own labile fraction and procedures for their assessment A systematic set of biochar samples produced from C4 plant biomass under a range of pyrolysis process conditions were incubated in a C3 soil at three discrete levels of organic matter status (a result of contrasting long-term land management on a single site) The biochar samples were characterised for labile carbon content ex-situ and then added to each soil Priming potential was determined by a comparison of CO2 flux rates and its isotopic analysis for attribution of source The results conclusively showed that while carbon mineralisation was often higher in biochar amended soil, this was due to rapid utilisation of a small labile component of biochar and that biochar did not prime for the loss of native organic soil organic matter Furthermore, in some cases negative priming occurred, with lower carbon mineralisation in biochar amended soil, probably as a result of the stabilisation of labile soil carbon

Dissolved carbon leaching from soil is a crucial component of the net ecosystem carbon balance

Abstract: Estimates of carbon leaching losses from different land use systems are few and their contribution to the net ecosystem carbon balance is uncertain. We investigated leaching of dissolved organic carbon (DOC), dissolved inorganic carbon (DIC), and dissolved methane (CH4), at forests, grasslands, and croplands across Europe. Biogenic contributions to DIC were estimated by means of its δ13C signature. Leaching of biogenic DIC was 8.3±4.9 g m−2 yr−1 for forests, 24.1±7.2 g m−2 yr−1 for grasslands, and 14.6±4.8 g m−2 yr−1 for croplands. DOC leaching equalled 3.5±1.3 g m−2 yr−1 for forests, 5.3±2.0 g m−2 yr−1 for grasslands, and 4.1±1.3 g m−2 yr−1 for croplands. The average flux of total biogenic carbon across land use systems was 19.4±4.0 g C m−2 yr−1. Production of DOC in topsoils was positively related to their C/N ratio and DOC retention in subsoils was inversely related to the ratio of organic carbon to iron plus aluminium (hydr)oxides. Partial pressures of CO2 in soil air and soil pH determined DIC concentrations and fluxes, but soil solutions were often supersaturated with DIC relative to soil air CO2. Leaching losses of biogenic carbon (DOC plus biogenic DIC) from grasslands equalled 5–98% (median: 22%) of net ecosystem exchange (NEE) plus carbon inputs with fertilization minus carbon removal with harvest. Carbon leaching increased the net losses from cropland soils by 24–105% (median: 25%). For the majority of forest sites, leaching hardly affected actual net ecosystem carbon balances because of the small solubility of CO2 in acidic forest soil solutions and large NEE. Leaching of CH4 proved to be insignificant compared with other fluxes of carbon. Overall, our results show that leaching losses are particularly important for the carbon balance of agricultural systems.

Changes in microbial community characteristics and soil organic matter with nitrogen additions in two tropical forests

Abstract: Microbial communities and their associated enzyme activities affect the amount and chemical quality of carbon (C) in soils. Increasing nitrogen (N) deposition, particularly in N-rich tropical forests, is likely to change the composition and behavior of microbial communities and feed back on ecosystem structure and function. This study presents a novel assessment of mechanistic links between microbial responses to N deposition and shifts in soil organic matter (SOM) quality and quantity. We used phospholipid fatty acid (PLFA) analysis and microbial enzyme assays in soils to assess microbial community responses to long-term N additions in two distinct tropical rain forests. We used soil density fractionation and 13C nuclear magnetic resonance (NMR) spectroscopy to measure related changes in SOM pool sizes and chemical quality. Microbial biomass increased in response to N fertilization in both tropical forests and corresponded to declines in pools of low-density SOM. The chemical quality of this soil C pool reflected ecosystem-specific changes in microbial community composition. In the lower-elevation forest, there was an increase in gram-negative bacteria PLFA biomass, and there were significant losses of labile C chemical groups (O-alkyls). In contrast, the upper-elevation tropical forest had an increase in fungal PLFAs with N additions and declines in C groups associated with increased soil C storage (alkyls). The dynamics of microbial enzymatic activities with N addition provided a functional link between changes in microbial community structure and SOM chemistry. Ecosystem-specific changes in microbial community composition are likely to have far-reaching effects on soil carbon storage and cycling. This study indicates that microbial communities in N-rich tropical forests can be sensitive to added N, but we can expect significant variability in how ecosystem structure and function respond to N deposition among tropical forest types.

Old and stable soil organic matter is not necessarily chemically recalcitrant: Implications for modeling concepts and temperature sensitivity

Abstract: Soil carbon turnover models generally divide soil carbon into pools with varying intrinsic decomposition rates. Although these decomposition rates are modified by factors such as temperature, texture, and moisture, they are rationalized by assuming chemical structure is a primary controller of decomposition. In the current work, we use near edge X-ray absorption fine structure (NEXAFS) spectroscopy in combination with differential scanning calorimetry (DSC) and alkaline cupric oxide (CuO) oxidation to explore this assumption. Specifically, we examined material from the 2.3–2.6 kg L � 1 density fraction of three soils of different type (Oxisol, Alfisol, Inceptisol). The density fraction with the youngest 14 C age (Oxisol, 107 years) showed the highest relative abundance of aromatic groups and the lowest O-alkyl C/aromatic C ratio as determined by NEXAFS. Conversely, the fraction with the oldest C (Inceptisol, 680 years) had the lowest relative abundance of aromatic groups and highest O-alkyl C/aromatic C ratio. This sample also had the highest proportion of thermally labile materials as measured by DSC, and the highest ratio of substituted fatty acids to lignin phenols as indicated by CuO oxidation. Therefore, the organic matter of the Inceptisol sample, with a 14 C age associated with ‘passive’ pools of carbon (680 years), had the largest proportion of easily metabolizable organic molecules with low thermodynamic stability, whereas the organic matter of the much younger Oxisol sample (107 years) had the highest proportion of supposedly stable organic structures considered more difficult to metabolize. Our results demonstrate that C age is not necessarily related to molecular structure or thermodynamic stability, and we suggest that soil carbon models would benefit from viewing turnover rate as codetermined by the interaction between substrates, microbial actors, and abiotic driving variables. Furthermore, assuming that old carbon is composed of complex or ‘recalcitrant’ compounds will erroneously attribute a greater temperature sensitivity to those materials than they may actually possess.

Interactive priming of biochar and labile organic matter mineralization in a smectite-rich soil.

Abstract: Biochar is considered as an attractive tool for long-term carbon (C) storage in soil. However, there is limited knowledge about the effect of labile organic matter (LOM) on biochar-C mineralization in soil or the vice versa. An incubation experiment (20 °C) was conducted for 120 days to quantify the interactive priming effects of biochar-C and LOM-C mineralization in a smectitic clayey soil. Sugar cane residue (source of LOM) at a rate of 0, 1, 2, and 4% (w/w) in combination with two wood biochars (450 and 550 °C) at a rate of 2% (w/w) were applied to the soil. The use of biochars (∼ −36‰) and LOM (−12.7‰) or soil (−14.3‰) with isotopically distinct δ13C values allowed the quantification of C mineralized from biochar and LOM/soil. A small fraction (0.4–1.1%) of the applied biochar-C was mineralized, and the mineralization of biochar-C increased significantly with increasing application rates of LOM, especially during the early stages of incubation. Concurrently, biochar application reduced the mineralizat...

Mercury reduction and complexation by natural organic matter in anoxic environments

Abstract: Mercuric Hg(II) species form complexes with natural dissolved organic matter (DOM) such as humic acid (HA), and this binding is known to affect the chemical and biological transformation and cycling of mercury in aquatic environments. Dissolved elemental mercury, Hg(0), is also widely observed in sediments and water. However, reactions between Hg(0) and DOM have rarely been studied in anoxic environments. Here, under anoxic dark conditions we show strong interactions between reduced HA and Hg(0) through thiolate ligand-induced oxidative complexation with an estimated binding capacity of ~3.5 μmol Hg/g HA and a partitioning coefficient >106 mL/g. We further demonstrate that Hg(II) can be effectively reduced to Hg(0) in the presence of as little as 0.2 mg/L reduced HA, whereas production of Hg(0) is inhibited by complexation as HA concentration increases. This dual role played by DOM in the reduction and complexation of mercury is likely widespread in anoxic sediments and water and can be expected to significantly influence the mercury species transformations and biological uptake that leads to the formation of toxic methylmercury.

Metabolic flexibility of sulfate-reducing bacteria.

Abstract: Dissimilatory sulfate-reducing prokaryotes (SRB) are a very diverse group of anaerobic bacteria that are omnipresent in nature and play an imperative role in the global cycling of carbon and sulfur. In anoxic marine sediments sulfate reduction accounts for up to 50% of the entire organic mineralization in coastal and shelf ecosystems where sulfate diffuses several meters deep into the sediment. As a consequence, SRB would be expected in the sulfate-containing upper sediment layers, whereas methanogenic Archaea would be expected to succeed in the deeper sulfate-depleted layers of the sediment. Where sediments are high in organic matter, sulfate is depleted at shallow sediment depths, and biogenic methane production will occur. In the absence of sulfate, many SRB ferment organic acids and alcohols, producing hydrogen, acetate, and carbon dioxide, and may even rely on hydrogen- and acetate-scavenging methanogens to convert organic compounds to methane. SRB can establish two different life styles, and these can be termed as sulfidogenic and acetogenic, hydrogenogenic metabolism. The advantage of having different metabolic capabilities is that it raises the chance of survival in environments when electron acceptors become depleted. In marine sediments, SRB and methanogens do not compete but rather complement each other in the degradation of organic matter. Also in freshwater ecosystems with sulfate concentrations of only 10-200 μM, sulfate is consumed efficiently within the top several cm of the sediments. Here, many of the δ-Proteobacteria present have the genetic machinery to perform dissimilatory sulfate reduction, yet they have an acetogenic, hydrogenogenic way of life. In this review we evaluate the physiology and metabolic mode of SRB in relation with their environment.

Methods for determining peat humification and for quantifying peat bulk density, organic matter and carbon content for palaeostudies of climate and peatland carbon dynamics.

Abstract: Quantitative palaeostudies of climate change and carbon dynamics are reliant on precise and accurate laboratory measurements Here we present laboratory protocols for the colorimetric determination of peat humification and for bulk density and organic matter content, including an overview of methodological considerations for the quantification of the carbon content of peat

Increasing iron concentrations in surface waters – a factor behind brownification?

Abstract: . Browning of inland waters has been noted over large parts of the Northern hemisphere and is a phenomenon with both ecological and societal consequences. The increase in water color is generally ascribed to increasing concentrations of dissolved organic matter of terrestrial origin. However, oftentimes the increase in water color is larger than that of organic matter, implying that changes in the concentration of organic matter alone cannot explain the enhanced water color. Water color is known to be affected also by the quality of organic matter and the prevalence of iron. Here we investigated trends in water color, organic matter and iron between 1972 and 2010 in 30 rivers draining into the Swedish coast (data from the national Swedish monitoring program), and performed a laboratory iron addition experiment to natural waters, to evaluate the role of iron and organic matter in determining water color. By comparing the effect of iron additions on water color in the experiment, to variation in water color and iron concentration in the monitoring data, we show that iron can explain a significant share of the variation in water color (on average 25 %), especially in the rivers in the north of Sweden (up to 74 %). Furthermore, positive trends for iron are seen in 27 of 30 rivers (21–468 %) and the increase in iron is larger than that of organic matter, indicating that iron and organic matter concentrations are controlled by similar but not identical processes. We speculate that increasing iron concentrations can be caused by changes in redox conditions, that mean that more anoxic water with high concentrations of soluble FeII are feeding into the surface waters. More studies are needed about why iron is increasing so strongly, since both causes and consequences are partly different from those of increasing organic matter content.

Microbial production of recalcitrant organic matter in global soils: implications for productivity and climate policy

Abstract: Microbial production of recalcitrant organic matter in global soils: implications for productivity and climate policy

Synergistic effects of water temperature and dissolved nutrients on litter decomposition and associated fungi

Abstract: In woodland streams, the decomposition of allochthonous organic matter constitutes a fundamental ecosystem process, where aquatic hyphomycetes play a pivotal role. It is therefore greatly affected by water temperature and nutrient concentrations. The individual effects of these factors on the decomposition of litter have been studied previously. However, in the climate warming scenario predicted for this century, water temperature and nutrient concentrations are expected to increase simultaneously, and their combined effects on litter decomposition and associated biological activity remains unevaluated. In this study, we addressed the individual and combined effects of water temperature (three levels) and nutrient concentrations (two levels) on the decomposition of alder leaves and associated aquatic hyphomycetes in microcosms. Decomposition rates across treatments varied between 0.0041dayˉ¹ at 5°C and low nutrient level and 0.0100 dayˉ¹ at 15°C and high nutrient level. The stimulation of biological variables at high nutrients and temperatures indicates that nutrient enrichment of streams might have a higher stimulatory effect on fungal performance and decomposition rates under a warming scenario than at present. The stimulation of fungal biomass and sporulation with increasing temperature at both nutrient levels shows that increases in water temperature might enhance fungal growth and reproduction in both oligotrophic and eutrophic streams. The stimulation of fungal respiration and litter decomposition with increasing temperature at high nutrients indicates that stimulation of carbon mineralization will probably occur at eutrophied streams, while oligotrophic conditions seem to be 'protected' from warming. All biological variables were stimulated when both factors increased, as a result of synergistic interactions between factors. Increased water temperature and nutrient level also affected the structure of aquatic hyphomycete assemblages. It is plausible that if water quality of presently eutrophied streams is improved, the potential stimulatory effects of future increases in water temperature on aquatic biota and processes might be mitigated.

Stabilization of Organic Soils with Fly Ash

Abstract: The effectiveness of fly ash use in the stabilization of organic soils and the factors that are likely to affect the degree of stabilization were studied. Unconfined compression and resilient modulus tests were conducted on organic soil–fly ash mixtures and untreated soil specimens. The unconfined compressive strength of organic soils can be increased using fly ash, but the amount of increase depends on the type of soil and characteristics of the fly ash. Resilient moduli of the slightly organic and organic soils can also be significantly improved. The increases in strength and stiffness are attributed primarily to cementing caused by pozzolanic reactions, although the reduction in water content resulting from the addition of dry fly ash solid also contributes to strength gain. The pozzolonic effect appears to diminish as the water content decreases. The significant characteristics of fly ash that affect the increase in unconfined compressive strength and resilient modulus include CaO content and CaO/SiO2...

Soil organic phosphorus in lowland tropical rain forests

Abstract: Phosphorus is widely considered to constrain primary productivity in tropical rain forests, yet the chemistry of soil organic phosphorus in such ecosystems remains poorly understood. We assessed the composition of soil organic phosphorus in 19 contrasting soils under lowland tropical forest in the Republic of Panama using NaOH–EDTA extraction and solution 31P nuclear magnetic resonance spectroscopy. The soils spanned a strong rainfall gradient (1730–3404 mm y−1) and contained a wide range of chemical properties (pH 3.3–7.0; total carbon 2.8–10.4%; total phosphorus 74–1650 mg P kg−1). Soil organic phosphorus concentrations ranged between 22 and 494 mg P kg−1 and were correlated positively with total soil phosphorus, pH, and total carbon, but not with annual rainfall. Organic phosphorus constituted 26 ± 1% (mean ± STD error, n = 19) of the total phosphorus, suggesting that this represents a broad emergent property of tropical forest soils. Organic phosphorus occurred mainly as phosphate monoesters (68–96% of total organic phosphorus) with smaller concentrations of phosphate diesters in the form of DNA (4–32% of total organic phosphorus). Phosphonates, which contain a direct carbon–phosphorus bond, were detected in only two soils (3% of the organic phosphorus), while pyrophosphate, an inorganic polyphosphate with a chain length of two, was detected in all soils at concentrations up to 13 mg P kg−1 (3–13% of extracted inorganic phosphorus). Phosphate monoesters were a greater proportion of the total organic phosphorus in neutral soils with high concentrations of phosphorus and organic matter, whereas the proportion of phosphate diesters was greater in very acidic soils low in phosphorus and organic matter. Most soils did not contain detectable concentrations of either myo- or scyllo-inositol hexakisphosphate, which is in marked contrast to many temperate mineral soils that contain abundant inositol phosphates. We conclude that soil properties exert a strong control on the amounts and forms of soil organic phosphorus in tropical rain forests, but that the proportion of the total phosphorus in organic forms is relatively insensitive to variation in climate and soil properties. Further work is now required to assess the contribution of soil organic phosphorus to the nutrition and diversity of plants in these species-rich ecosystems.