Showing papers on "Water column published in 2017"

Decline in global oceanic oxygen content during the past five decades

Abstract: Ocean models predict a decline in the dissolved oxygen inventory of the global ocean of one to seven per cent by the year 2100, caused by a combination of a warming-induced decline in oxygen solubility and reduced ventilation of the deep ocean1, 2. It is thought that such a decline in the oceanic oxygen content could affect ocean nutrient cycles and the marine habitat, with potentially detrimental consequences for fisheries and coastal economies3, 4, 5, 6. Regional observational data indicate a continuous decrease in oceanic dissolved oxygen concentrations in most regions of the global ocean1, 7, 8, 9, 10, with an increase reported in a few limited areas, varying by study1, 10. Prior work attempting to resolve variations in dissolved oxygen concentrations at the global scale reported a global oxygen loss of 550 ± 130 teramoles (1012 mol) per decade between 100 and 1,000 metres depth based on a comparison of data from the 1970s and 1990s10. Here we provide a quantitative assessment of the entire ocean oxygen inventory by analysing dissolved oxygen and supporting data for the complete oceanic water column over the past 50 years. We find that the global oceanic oxygen content of 227.4 ± 1.1 petamoles (1015 mol) has decreased by more than two per cent (4.8 ± 2.1 petamoles) since 1960, with large variations in oxygen loss in different ocean basins and at different depths. We suggest that changes in the upper water column are mostly due to a warming-induced decrease in solubility and biological consumption. Changes in the deeper ocean may have their origin in basin-scale multi-decadal variability, oceanic overturning slow-down and a potential increase in biological consumption11, 12.

Major impacts of climate change on deep-sea benthic ecosystems

Abstract: The deep sea encompasses the largest ecosystems on Earth. Although poorly known, deep seafloor ecosystems provide services that are vitally important to the entire ocean and biosphere. Rising atmospheric greenhouse gases are bringing about significant changes in the environmental properties of the ocean realm in terms of water column oxygenation, temperature, pH and food supply, with concomitant impacts on deep-sea ecosystems. Projections suggest that abyssal (3000–6000 m) ocean temperatures could increase by 1°C over the next 84 years, while abyssal seafloor habitats under areas of deep-water formation may experience reductions in water column oxygen concentrations by as much as 0.03 mL L –1 by 2100. Bathyal depths (200–3000 m) worldwide will undergo the most significant reductions in pH in all oceans by the year 2100 (0.29 to 0.37 pH units). O 2 concentrations will also decline in the bathyal NE Pacific and Southern Oceans, with losses up to 3.7% or more, especially at intermediate depths. Another important environmental parameter, the flux of particulate organic matter to the seafloor, is likely to decline significantly in most oceans, most notably in the abyssal and bathyal Indian Ocean where it is predicted to decrease by 40–55% by the end of the century. Unfortunately, how these major changes will affect deep-seafloor ecosystems is, in some cases, very poorly understood. In this paper, we provide a detailed overview of the impacts of these changing environmental parameters on deep-seafloor ecosystems that will most likely be seen by 2100 in continental margin, abyssal and polar settings. We also consider how these changes may combine with other anthropogenic stressors (e.g., fishing, mineral mining, oil and gas extraction) to further impact deep-seafloor ecosystems and discuss the possible societal implications.

Petroleum dynamics in the sea and influence of subsea dispersant injection during Deepwater Horizon.

Abstract: During the Deepwater Horizon disaster, a substantial fraction of the 600,000-900,000 tons of released petroleum liquid and natural gas became entrapped below the sea surface, but the quantity entrapped and the sequestration mechanisms have remained unclear. We modeled the buoyant jet of petroleum liquid droplets, gas bubbles, and entrained seawater, using 279 simulated chemical components, for a representative day (June 8, 2010) of the period after the sunken platform's riser pipe was pared at the wellhead (June 4-July 15). The model predicts that 27% of the released mass of petroleum fluids dissolved into the sea during ascent from the pared wellhead (1,505 m depth) to the sea surface, thereby matching observed volatile organic compound (VOC) emissions to the atmosphere. Based on combined results from model simulation and water column measurements, 24% of released petroleum fluid mass became channeled into a stable deep-water intrusion at 900- to 1,300-m depth, as aqueously dissolved compounds (∼23%) and suspended petroleum liquid microdroplets (∼0.8%). Dispersant injection at the wellhead decreased the median initial diameters of simulated petroleum liquid droplets and gas bubbles by 3.2-fold and 3.4-fold, respectively, which increased dissolution of ascending petroleum fluids by 25%. Faster dissolution increased the simulated flows of water-soluble compounds into biologically sparse deep water by 55%, while decreasing the flows of several harmful compounds into biologically rich surface water. Dispersant injection also decreased the simulated emissions of VOCs to the atmosphere by 28%, including a 2,000-fold decrease in emissions of benzene, which lowered health risks for response workers.

Diatom bloom‐derived bottom water hypoxia off the Changjiang estuary, with and without typhoon influence

Abstract: During the summers of 2009 and 2013, seawater pH and concentrations of dissolved oxygen, inorganic carbon, and nutrients were measured off the Changjiang estuary in the East China Sea. The 2009 cruise captured the effects of Typhoon Morakot; the 2013 cruise sampled more typical conditions (no typhoon). Data from both years indicate a close correlation between high primary productivity in surface waters and hypoxia in bottom waters. Based on these observations, we developed a conceptual model to guide an exploration of processes contributing to the formation of summertime bottom hypoxia. A mixing-model analysis of the 2009 data identified a surface diatom bloom as the major (70–80%) source of the organic carbon that decomposed and ultimately led to bottom water hypoxia. Within the Changjiang River plume, depth-integrated net biological production in the water column was 1.8 g C m−2 d−1, indicating strong autotrophic production, which in turn led to a high respiration rate of 1.2 g C m−2 d−1 in the bottom water. During both cruises, strong surface-to-bottom physical and metabolic coupling was evident. In 2009, storm-driven inputs of nutrients from elevated river discharge and strong vertical mixing helped to fuel the rapid development of a surface diatom bloom. Afterwards, stratified conditions re-established, newly formed labile organic matter sank, and bottom water oxygen was quickly consumed to an extent that hypoxia and acidification developed. To our knowledge, the observed rate of hypoxia and acidification development (within 6 d) is the fastest yet reported for the Changjiang River plume.

Watershed Urbanization Linked to Differences in Stream Bacterial Community Composition

Abstract: Urbanization strongly influences headwater stream chemistry and hydrology, but little is known about how these conditions impact bacterial community composition. We predicted that urbanization would impact bacterial community composition, but that stream water column bacterial communities would be most strongly linked to urbanization at a watershed-scale, as measured by impervious cover, while sediment bacterial communities would correlate with environmental conditions at the scale of stream reaches. To test this hypothesis, we determined bacterial community composition in the water column and sediment of headwater streams located across a gradient of watershed impervious cover using high-throughput 16S rRNA gene amplicon sequencing. Alpha diversity metrics did not show a strong response to catchment urbanization, but beta diversity was significantly related to watershed impervious cover with significant differences also found between water column and sediment samples. Samples grouped primarily according to habitat – water column versus sediment – with a significant response to watershed impervious cover nested within each habitat type. Compositional shifts for communities in urbanized streams indicated an increase in taxa associated with human activity including bacteria from the genus Polynucleobacter, which is widespread, but has been associated with eutrophic conditions in larger water bodies. Another indicator of communities in urbanized streams was an OTU from the genus Gallionella, which is linked to corrosion of water distribution systems. To identify changes in bacterial community interactions, bacterial co-occurrence networks were generated from urban and forested samples. The urbanized co-occurrence network was much smaller and had fewer co-occurrence events per taxon than forested equivalents, indicating a loss of keystone taxa with urbanization. Our results suggest that urbanization has significant impacts on the community composition of headwater streams, and suggest that processes driving these changes in urbanized water column versus sediment environments are distinct.

Interannual variability in phytoplankton biomass and species composition in northern Marguerite Bay (West Antarctic Peninsula) is governed by both winter sea ice cover and summer stratification

Abstract: The rapid warming of the West Antarctic Peninsula region has led to reduced sea ice cover and enhanced glacial melt water input. This has potential implications for marine ecosystems, notably phytoplankton growth, biomass, and composition. Fifteen years (1997–2012) of year-round size fractionated chlorophyll a (Chl a), phytoplankton pigment fingerprinting and environmental data were analyzed to identify the relationship between sea ice cover, water column stability and phytoplankton dynamics in northern Marguerite Bay, Antarctica. Over the investigated period, both summer (December–February) and winter biomass declined significantly, 38.5% and 33.3% respectively. Winter phytoplankton biomass was low ( 20 μm) fraction was strongly decreased in the low biomass years, from 92% to 39%, coinciding with a smaller diatom fraction in favor of nanophytoplankton ( 95%) during summers with average-to-high biomass. We advance a conceptual model whereby low winter sea ice cover leads to low phytoplankton biomass and enhanced proportions of nanophytoplankton, when this coincides with reduced stratification during summer. These changes are likely to have a strong effect on the entire Antarctic marine food web, including krill biomass, and distribution.

Transparency, Geomorphology and Mixing Regime Explain Variability in Trends in Lake Temperature and Stratification across Northeastern North America (1975–2014)

Abstract: Lake surface water temperatures are warming worldwide, raising concerns about the future integrity of valuable lake ecosystem services. In contrast to surface water temperatures, we know far less about what is happening to water temperature beneath the surface, where most organisms live. Moreover, we know little about which characteristics make lakes more or less sensitive to climate change and other environmental stressors. We examined changes in lake thermal structure for 231 lakes across northeastern North America (NENA), a region with an exceptionally high density of lakes. We determined how lake thermal structure has changed in recent decades (1975–2012) and assessed which lake characteristics are related to changes in lake thermal structure. In general, NENA lakes had increasing near-surface temperatures and thermal stratification strength. On average, changes in deepwater temperatures for the 231 lakes were not significantly different than zero, but individually, half of the lakes experienced warming and half cooling deepwater temperature through time. More transparent lakes (Secchi transparency >5 m) tended to have higher near-surface warming and greater increases in strength of thermal stratification than less transparent lakes. Whole-lake warming was greatest in polymictic lakes, where frequent summer mixing distributed heat throughout the water column. Lakes often function as important sentinels of climate change, but lake characteristics within and across regions modify the magnitude of the signal with important implications for lake biology, ecology and chemistry.

Tracing the origin of the oxygen-consuming organic matter in the hypoxic zone in a large eutrophic estuary:the lower reach of the Pearl River Estuary, China

Abstract: . We assess the relative contributions of different sources of organic matter, marine vs. terrestrial, to oxygen consumption in an emerging hypoxic zone in the lower Pearl River Estuary (PRE), a large eutrophic estuary located in Southern China. Our cruise, conducted in July 2014, consisted of two legs before and after the passing of Typhoon Rammasun, which completely de-stratified the water column. The stratification recovered rapidly, within 1 day after the typhoon. We observed algal blooms in the upper layer of the water column and hypoxia underneath in bottom water during both legs. Repeat sampling at the initial hypoxic station showed severe oxygen depletion down to 30 µmol kg−1 before the typhoon and a clear drawdown of dissolved oxygen after the typhoon. Based on a three endmember mixing model and the mass balance of dissolved inorganic carbon and its isotopic composition, the δ13C of organic carbon remineralized in the hypoxic zone was −23.2 ± 1.1 ‰. We estimated that 65 ± 16 % of the oxygen-consuming organic matter was derived from marine sources, and the rest (35 ± 16 %) was derived from the continent. In contrast to a recently studied hypoxic zone in the East China Sea off the Changjiang Estuary where marine organic matter dominated oxygen consumption, here terrestrial organic matter significantly contributed to the formation and maintenance of hypoxia. How varying amounts of these organic matter sources drive oxygen consumption has important implications for better understanding hypoxia and its mitigation in bottom waters.

New insights on the dominance of cryptophytes in Antarctic coastal waters: A case study in Gerlache Strait

Abstract: Changes in phytoplankton composition from large diatoms to small cryptophytes and their implications to the food web have been previously associated with rapid warming of surface waters in the western Antarctic Peninsula (WAP). However, ecological and physiological attributes that favor dominance of these flagellates in the region have not been fully explored. The overall aim of this work was to characterize the phytoplankton pigments and assemblages in relation to environmental conditions during three successive summer cruises (2013, 2014 and 2015) in the Gerlache Strait − a coastal area in the northern WAP. Data on phytoplankton (through HPLC/CHEMTAX pigment analysis) and associated physical (water column structure) and chemical (macronutrients) parameters were determined. Cryptophytes were conspicuously found in shallow mixed layers, under stratified conditions, as the main contributors to total phytoplankton biomass. Their greatest contributions were associated with warmer surface waters at the northwestern sector of the strait. Other phytoplankton groups (Phaeocystis antarctica in 2013 and small diatoms in both 2014 and 2015) were also important components. Photoprotective carotenoids (mainly alloxanthin), with an important role in preventing photodamage caused by excess light, were closely linked with the dominance of cryptophytes at surface layers. The results of this study suggest that the prevalence of cryptophytes in WAP coastal waters can be, to a great extent, due to a particular ability of those small flagellates to successfully grow in highly illuminated conditions in shallow upper mixed layers and strong water column stratification.

Permeability shapes bacterial communities in sublittoral surface sediments

Abstract: The first interaction of water column-derived organic matter with benthic microbial communities takes place in surface sediments which are acting as biological filters catalyzing central steps of elemental cycling. Here we analyzed the bacterial diversity and community structure of sediment top layers at seven sites in the North Sea where sediment properties ranged from coarse-grained and highly permeable to fine-grained and impermeable. Bacterial communities in surface sediments were richer, more even and significantly different from communities in bottom waters as revealed by Illumina tag sequencing of 16S rRNA genes. Sediment permeability had a clear influence on community composition which was confirmed by CARD-FISH. Sulfate-reducing Desulfobacteraceae (2-5% of total cells), Flavobacteriaceae (3-5%) were more abundant in impermeable than in highly permeable sediments where acidobacterial Sva0725 dominated (11-15%). Myxobacterial Sandaracinaceae were most abundant in medium permeable sediments (3-7%). Woeseiaceae/JTB255 and Planctomycetes were major groups in all sediments (4-6%, 8-22%). Planctomycetes were highly diverse and branched throughout the phylum. We propose Planctomycetes as key bacteria for degradation of high molecular weight compounds and recalcitrant material entering surface sediments from the water column. Benthic Flavobacteriaceae likely have restricted capabilities for macromolecule degradation and might profit with Sandaracinaceae and Acidobacteria from low molecular weight compounds.

Polymetallic nodules, sediments, and deep waters in the equatorial North Pacific exhibit highly diverse and distinct bacterial, archaeal, and microeukaryotic communities.

Abstract: Concentrated seabed deposits of polymetallic nodules, which are rich in economically valuable metals (e.g., copper, nickel, cobalt, manganese), occur over vast areas of the abyssal Pacific Ocean floor. Little is currently known about the diversity of microorganisms inhabiting abyssal habitats. In this study, sediment, nodule, and water column samples were collected from the Clarion-Clipperton Zone of the Eastern North Pacific. The diversities of prokaryote and microeukaryote communities associated with these habitats were examined. Microbial community composition and diversity varied with habitat type, water column depth, and sediment horizon. Thaumarchaeota were relatively enriched in the sediments and nodules compared to the water column, whereas Gammaproteobacteria were the most abundant sequences associated with nodules. Among the Eukaryota, rRNA genes belonging to the Cryptomonadales were relatively most abundant among organisms associated with nodules, whereas rRNA gene sequences deriving from members of the Alveolata were relatively enriched in sediments and the water column. Nine operational taxonomic unit (OTU)s were identified that occur in all nodules in this dataset, as well as all nodules found in a study 3000-9000 km from our site. Microbial communities in the sediments had the highest diversity, followed by nodules, and then by the water column with <1/3 the number of OTUs as in the sediments.

Thaumarchaeal ecotype distributions across the equatorial Pacific Ocean and their potential roles in nitrification and sinking flux attenuation

Abstract: Thaumarchaea are among the most abundant microbial groups in the ocean, but controls on their abundance and the distribution and metabolic potential of different subpopulations are poorly constrained. Here, two ecotypes of ammonia-oxidizing thaumarchaea were quantified using ammonia monooxygenase (amoA) genes across the equatorial Pacific Ocean. The shallow, or water column “A” (WCA), ecotype was the most abundant ecotype at the depths of maximum nitrification rates, and its abundance correlated with other biogeochemical indicators of remineralization such as NO3 : Si and total Hg. Metagenomes contained thaumarchaeal genes encoding for the catalytic subunit of the urease enzyme (ureC) at all depths, suggesting that members of both WCA and the deep, water column “B” (WCB) ecotypes may contain ureC. Coupled urea hydrolysis-ammonia oxidation rates were similar to ammonia oxidation rates alone, suggesting that urea could be an important source of ammonia for mesopelagic ammonia oxidizers. Potential inducement of metal limitation of both ammonia oxidation and urea hydrolysis was demonstrated via additions of a strong metal chelator. The water column inventory of WCA was correlated with the depth-integrated abundance of WCB, with both likely controlled by the flux of sinking particulate organic matter, providing strong evidence of vertical connectivity between the ecotypes. Further, depth-integrated amoA gene abundance and nitrification rates were correlated with particulate organic nitrogen flux measured by contemporaneously deployed sediment traps. Together, the results refine our understanding of the controls on thaumarchaeal distributions in the ocean, and provide new insights on the relationship between material flux and microbial communities in the mesopelagic.

Bacteriophage Distributions and Temporal Variability in the Ocean's Interior.

Abstract: Bacteriophages are numerically the most abundant DNA-containing entities in the oligotrophic ocean, yet how specific phage populations vary over time and space remains to be fully explored. Here, we conducted a metagenomic time-series survey of double-stranded DNA phages throughout the water column in the North Pacific Subtropical Gyre, encompassing 1.5 years from depths of 25 to 1,000 m. Viral gene sequences were identified in assembled metagenomic samples, yielding an estimated 172,385 different viral gene families. Viral marker gene distributions suggested that lysogeny was more prevalent at mesopelagic depths than in surface waters, consistent with prior prophage induction studies using mitomycin C. A total of 129 ALOHA viral genomes and genome fragments from 20 to 108 kbp were selected for further study, which represented the most abundant phages in the water column. Phage genotypes displayed discrete population structures. Most phages persisted throughout the time-series and displayed a strong depth structure that mirrored the stratified depth distributions of co-occurring bacterial taxa in the water column. Mesopelagic phages were distinct from surface water phages with respect to diversity, gene content, putative life histories, and temporal persistence, reflecting depth-dependent differences in host genomic architectures and phage reproductive strategies. The spatiotemporal distributions of the most abundant open-ocean bacteriophages that we report here provide new insight into viral temporal persistence, life history, and virus-host-environment interactions throughout the open-ocean water column. IMPORTANCE The North Pacific Subtropical Gyre represents one of the largest biomes on the planet, where microbial communities are central mediators of ecosystem dynamics and global biogeochemical cycles. Critical members of these communities are the viruses of marine bacteria, which can alter microbial metabolism and significantly influence their survival and productivity. To better understand these viral assemblages, we conducted genomic analyses of planktonic viruses over a seasonal cycle to ocean depths of 1,000 m. We identified 172,385 different viral gene families and 129 unique virus genotypes in this open-ocean setting. The spatiotemporal distributions of the most abundant open-ocean viruses that we report here provide new insights into viral temporal variability, life history, and virus-host-environment interactions throughout the water column.

Influence of invasive quagga mussels, phosphorus loads, and climate on spatial and temporal patterns of productivity in Lake Michigan: A biophysical modeling study

Abstract: We applied a three-dimensional biophysical model to Lake Michigan for the years 2000, 2005, and 2010 to consider the mechanisms controlling spatial and temporal patterns of phytoplankton abundance (chlorophyll a) and lake-wide productivity. Model skill was assessed by comparison to satellite-derived Chl a and field-measured water quality variables. We evaluated model sensitivity to scenarios of varying mussel filter feeding intensity, tributary phosphorus loads, and warm vs. cool winter-spring climate scenarios. During the winter-spring phytoplankton bloom, spatial patterns of Chl a were controlled by variables that influenced surface mixed layer depth: deep mixing reduced net phytoplankton growth through light limitation and by exposing the full water column to mussel filter feeding. Onset of summer and winter stratification promoted higher surface Chl a initially by increasing mean light exposure and by separating the euphotic zone from mussels. During the summer stratified period, areas of relatively high Chl a were associated with coastal plumes influenced by tributary-derived nutrients and coastal upwelling-downwelling. While mussels influenced spatial and temporal distribution of Chl a, lake-wide, annual mean primary production was more sensitive to phosphorus and warm/cool meteorology scenarios than to mussel filter feeding scenarios. Although Chl a and primary production declined over the quagga mussel invasion, our results suggest that increased nutrient loads would increase lake-wide productivity even in the presence of mussels; however, altered spatial and temporal patterns of productivity caused by mussel filter feeding would likely persist.

Contrasting cyanobacterial communities and microcystin concentrations in summers with extreme weather events: insights into potential effects of climate change

Abstract: Current climate change scenarios predict that aquatic systems will experience increases in temperature, thermal stratification, water column stability and in some regions, greater precipitation. These factors have been associated with promoting cyanobacterial blooms. However, limited data exist on how cyanobacterial composition and toxin production will be affected. Using a shallow eutrophic lake, we investigated how precipitation intensity and extended droughts influenced: (i) physical and chemical conditions, (ii) cyanobacterial community succession, and (iii) toxin production by Microcystis. Moderate levels of nitrate related to intermittent high rainfall during the summer of 2013–2014, lead to the dominance of Aphanizomenon gracile and Dolichospermum crassum (without heterocytes). Microcystis aeruginosa blooms occurred when ammonium concentrations and water temperature increased, and total nitrogen:total phosphorus ratios were low. In contrast, an extended drought (2014–2015 summer) resulted in prolonged stratification, increased dissolved reactive phosphorus, and low dissolved inorganic nitrogen concentrations. All A. gracile and D. crassum filaments contained heterocytes, M. aeruginosa density remained low, and the picocyanobacteria Aphanocapsa was abundant. A positive relationship (P < 0.001) was identified between microcystin quotas and surface water temperature. These results highlight the complex successional interplay of cyanobacteria species and demonstrated the importance of climate through its effect on nutrient concentrations, water temperature, and stratification.

Iron isotopes reveal distinct dissolved iron sources and pathways in the intermediate versus deep Southern Ocean.

Abstract: As an essential micronutrient, iron plays a key role in oceanic biogeochemistry. It is therefore linked to the global carbon cycle and climate. Here, we report a dissolved iron (DFe) isotope section in the South Atlantic and Southern Ocean. Throughout the section, a striking DFe isotope minimum (light iron) is observed at intermediate depths (200–1,300 m), contrasting with heavier isotopic composition in deep waters. This unambiguously demonstrates distinct DFe sources and processes dominating the iron cycle in the intermediate and deep layers, a feature impossible to see with only iron concentration data largely used thus far in chemical oceanography. At intermediate depths, the data suggest that the dominant DFe sources are linked to organic matter remineralization, either in the water column or at continental margins. In deeper layers, however, abiotic non-reductive release of Fe (desorption, dissolution) from particulate iron—notably lithogenic—likely dominates. These results go against the common but oversimplified view that remineralization of organic matter is the major pathway releasing DFe throughout the water column in the open ocean. They suggest that the oceanic iron cycle, and therefore oceanic primary production and climate, could be more sensitive than previously thought to continental erosion (providing lithogenic particles to the ocean), particle transport within the ocean, dissolved/particle interactions, and deep water upwelling. These processes could also impact the cycles of other elements, including nutrients.

Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment

Abstract: Lake sediments harbor diverse microbial communities that cycle carbon and nutrients while being constantly colonized and potentially buried by organic matter sinking from the water column. The interaction of activity and burial remained largely unexplored in aquatic sediments. We aimed to relate taxonomic composition to sediment biogeochemical parameters, test whether community turnover with depth resulted from taxonomic replacement or from richness effects, and to provide a basic model for the vertical community structure in sediments. We analyzed four replicate sediment cores taken from 30-m depth in oligo-mesotrophic Lake Stechlin in northern Germany. Each 30-cm core spanned ca. 170 years of sediment accumulation according to 137Cs dating and was sectioned into layers 1–4 cm thick. We examined a full suite of biogeochemical parameters and used DNA metabarcoding to examine community composition of microbial Archaea, Bacteria, and Eukaryota. Community β-diversity indicated nearly complete turnover within the uppermost 30 cm. We observed a pronounced shift from Eukaryota- and Bacteria-dominated upper layers ( 14 cm) dominated by enigmatic Archaea that typically occur in deep-sea sediments. Taxonomic replacement was the prevalent mechanism in structuring the community composition and was linked to parameters indicative of microbial activity (e.g., CO2 and CH4 concentration, bacterial protein production). Richness loss played a lesser role but was linked to conservative parameters (e.g., C, N, P) indicative of past conditions. By including all three domains, we were able to directly link the exponential decay of eukaryotes with the active sediment microbial community. The dominance of Archaea in deeper layers confirms earlier findings from marine systems and establishes freshwater sediments as a potential low-energy environment, similar to deep sea sediments. We propose a general model of sediment structure and function based on microbial characteristics and burial processes. An upper “replacement horizon” is dominated by rapid taxonomic turnover with depth, high microbial activity, and biotic interactions. A lower “depauperate horizon” is characterized by low taxonomic richness, more stable “low-energy” conditions, and a dominance of enigmatic Archaea.

Changes in marine prokaryote composition with season and depth over an Arctic polar year

Abstract: As the global climate changes, the higher latitudes are seen to be warming significantly faster. It is likely that the Arctic biome will experience considerable shifts in ice melt season length, leading to changes in photoirradiance and in the freshwater inputs to the marine environment. The exchange of nutrients between Arctic surface and deep waters and their cycling throughout the water column is driven by seasonal change. The impacts, however, of the current global climate transition period on the biodiversity of the Arctic Ocean and its activity are not yet known. To determine seasonal variation in the microbial communities in the deep water column, samples were collected from a profile (1-1000m depth) in the waters around the Svalbard archipelago throughout an annual cycle encompassing both the polar night and day. High-throughput sequencing of 16S rRNA gene amplicons was used to monitor prokaryote diversity. In epipelagic surface waters (200m), seasonality subsequently had much less effect on community composition. In summer, phytoplankton-associated Gammaproteobacteria and Flavobacteriia dominated surface waters, whilst in low light conditions (surface waters in winter months and deeper waters all year round), the Thaumarchaeota and Chloroflexi-type SAR202 predominated. Alpha-diversity generally increased in epipelagic waters as seasonal light availability decreased; OTU richness also consistently increased down through the water column, with the deepest darkest waters containing the greatest diversity. Beta-diversity analyses confirmed that seasonality and depth also primarily drove community composition. The relative abundance of the eleven predominant taxa showed significant changes in surface waters in summer months and varied with season depending on the phytoplankton bloom stage; corresponding populations in deeper waters however, remained relatively unchanged. Given the significance of the annual phytoplankton bloom pattern on prokaryote diversity in Arctic waters, any changes to bloom dynamics resulting from accelerated global warming will likely have major impacts on surface marine microbial communities, those impacts inevitably trickling down into deeper waters.

Spatiotemporal Variability in Phosphorus Species in the Pearl River Estuary: Influence of the River Discharge

Abstract: Phosphorus was the stoichiometrically limiting nutrient in the Pearl River Estuary (PRE). In order to examine how the river discharge regulates phosphorus dynamics in the PRE, the concentrations of dissolved inorganic phosphorus (DIP) and organic phosphorus (DOP), particulate inorganic phosphorus (PIP) and organic phosphorus (POP) in the water column were determined in May 2015 (spring), August 2015 (summer) and January 2016 (winter). Our results showed that all types of phosphorus were significantly lower in spring and summer than in winter. The Pearl River discharge input played an important role in regulating phosphorus dynamics. Strong vertical mixing in winter resulted in high levels of total particulate phosphorus (1.50 ± 0.97 μM) and dissolved phosphate (DIP: 1.44 ± 0.57 μM, DOP: 0.58 ± 0.42 μM) at the surface. On the other hand, the river discharge input created stratification in spring and summer, favoring the settlement of suspended particulate matter and enhancing light levels. This promoted phytoplankton growth, which was responsible for a DIP drawdown of 0.43 ± 0.37 μM in May and 0.56 ± 0.42 μM in August at the surface. Additionally, stratification restricted the bottom phosphorus replenishment. Our findings provided an insight into processes causing stoichiometric P limitation in the PRE.

Preferential sequestration of terrestrial organic matter in boreal lake sediments

Abstract: The molecular composition and origin has recently been demonstrated to play a critical role in the persistence of organic matter in lake water, but it is unclear to what degree chemical attributes and sources may also control settling and burial of organic matter in lake sediments. Here we compared the annual contribution of allochthonous and autochthonous sources to the organic matter settling in the water column and present in the sediments of 12 boreal lakes. We used the fluorescence properties and elemental composition of the organic matter to trace its origin and found a consistent pattern of increasing contribution of terrestrial compounds in the sediments as compared to the settling matter, with an annual average allochthony of ~87% and ~57%, respectively. Seasonal data revealed a predominance of in-lake-produced compounds sinking in the water column in summer. Yet only a slight concurrent decrease in the contribution of terrestrial C to lake sediments was observed during the same period, and sediment allochthony increased again to high levels in autumn. Our results reveal a preferential preservation of allochthonous matter in the sediments and highlight the role of lakes as sequesters of organic carbon primarily originating from the surrounding landscape.

Fate and Trophic Transfer of Rare Earth Elements in Temperate Lake Food Webs.

Abstract: Many mining projects targeting rare earth elements (REE) are in development in North America, but the background concentrations and trophic transfer of these elements in natural environments have not been well characterized. We sampled abiotic and food web components in 14 Canadian temperate lakes unaffected by mines to assess the natural ecosystem fate of REE. Individual REE and total REE concentrations (sum of individual element concentrations, ΣREE) were strongly related with each other throughout different components of lake food webs. Dissolved organic carbon and dissolved oxygen in the water column, as well as ΣREE in sediments, were identified as potential drivers of aqueous ΣREE. Log10 of median bioaccumulation factors ranged from 1.3, 3.7, 4.0, and 4.4 L/kg (wet weight) for fish muscle, zooplankton, predatory invertebrates, and nonpredatory invertebrates, respectively. [ΣREE] in fish, benthic macroinvertebrates, and zooplankton declined as a function of their trophic position, as determined by fu...

Stable oxygen isotopes and Mg/Ca in planktic foraminifera from modern surface sediments of the Western Pacific Warm Pool: Implications for thermocline reconstructions

Abstract: Mg/Ca and stable oxygen isotope compositions (δ18O) of planktic foraminifera tests are commonly used as proxies to reconstruct past ocean conditions including variations in the vertical water column structure. Accurate proxy calibrations require thorough regional studies, since parameters such as calcification depth and temperature of planktic foraminifera depend on local environmental conditions. Here we present radiocarbon‐dated, modern surface sediment samples and water column data (temperature, salinity, and seawater δ18O) from the Western Pacific Warm Pool. Seawater δ18O (δ18OSW) and salinity are used to calculate individual regressions for western Pacific surface and thermocline waters (δ18OSW = 0.37 × S‐12.4 and δ18OSW = 0.33 × S‐11.0). We combine shell δ18O and Mg/Ca with water column data to estimate calcification depths of several planktic foraminifera and establish regional Mg/Ca‐temperature calibrations. Globigerinoides ruber, Globigerinoides elongatus, and Globigerinoides sacculifer reflect mixed layer conditions. Pulleniatina obliquiloculata and Neogloboquadrina dutertrei and Globorotalia tumida preserve upper and lower thermocline conditions, respectively. Our multispecies Mg/Ca‐temperature calibration (Mg/Ca = 0.26exp0.097*T) matches published regressions. Assuming the same temperature sensitivity in all species, we propose species‐specific calibrations that can be used to reconstruct upper water column temperatures. The Mg/Ca temperature dependencies of G. ruber, G. elongatus, and G. tumida are similar to published equations. However, our data imply that calcification temperatures of G. sacculifer, P. obliquiloculata, and N. dutertrei are exceptionally warm in the western tropical Pacific and thus underestimated by previously published calibrations. Regional Mg/Ca‐temperature relations are best described by Mg/Ca = 0.24exp0.097*T for G. sacculifer and by Mg/Ca = 0.21exp0.097*T for P. obliquiloculata and N. dutertrei.