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Arina D. Omer
Researcher at Baylor College of Medicine
Publications - 23
Citations - 2046
Arina D. Omer is an academic researcher from Baylor College of Medicine. The author has contributed to research in topics: Genome & Sequence assembly. The author has an hindex of 9, co-authored 23 publications receiving 1320 citations. Previous affiliations of Arina D. Omer include Rice University.
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Journal ArticleDOI
Cohesin Loss Eliminates All Loop Domains
Suhas S.P. Rao,Suhas S.P. Rao,Su Chen Huang,Brian Glenn St Hilaire,Brian Glenn St Hilaire,Jesse M. Engreitz,Elizabeth M. Perez,Kyong-Rim Kieffer-Kwon,Adrian L. Sanborn,Adrian L. Sanborn,Adrian L. Sanborn,Sarah E. Johnstone,Sarah E. Johnstone,Gavin D. Bascom,Ivan D. Bochkov,Xingfan Huang,Xingfan Huang,Muhammad S. Shamim,Muhammad S. Shamim,Jaeweon Shin,Jaeweon Shin,Douglass Turner,Douglass Turner,Ziyi Ye,Ziyi Ye,Arina D. Omer,James T. Robinson,James T. Robinson,James T. Robinson,Tamar Schlick,Tamar Schlick,Tamar Schlick,Bradley E. Bernstein,Bradley E. Bernstein,Rafael Casellas,Eric S. Lander,Eric S. Lander,Eric S. Lander,Erez Lieberman Aiden +38 more
TL;DR: In this paper, the effects of degrading cohesin were explored, showing that loop domains can be eliminated and re-formed in under an hour, consistent with a model where loop extrusion is rapid.
Journal ArticleDOI
Improved reference genome of Aedes aegypti informs arbovirus vector control
Benjamin J. Matthews,Benjamin J. Matthews,Olga Dudchenko,Olga Dudchenko,Sarah B. Kingan,Sergey Koren,Igor Antoshechkin,Jacob E. Crawford,William J. Glassford,Margaret Herre,Seth Redmond,Seth Redmond,Noah H. Rose,Gareth D. Weedall,Gareth D. Weedall,Yang Wu,Yang Wu,Sanjit S. Batra,Sanjit S. Batra,Carlos A Brito-Sierra,Steven D. Buckingham,Corey L. Campbell,Saki Chan,Eric Cox,Benjamin R. Evans,Thanyalak Fansiri,Igor Filipović,Albin Fontaine,Andrea Gloria-Soria,Andrea Gloria-Soria,Richard Hall,Vinita Joardar,Andrew K. Jones,Raissa G.G. Kay,Vamsi K. Kodali,Joyce Lee,Gareth J Lycett,Sara N. Mitchell,Jill Muehling,Michael R. Murphy,Arina D. Omer,Arina D. Omer,Frederick A. Partridge,Paul Peluso,Aviva Presser Aiden,Aviva Presser Aiden,Vidya Ramasamy,Gordana Rašić,Sourav Roy,Karla Saavedra-Rodriguez,Shruti Sharan,Atashi Sharma,Melissa Smith,Joe Turner,Allison M Weakley,Zhilei Zhao,Omar S. Akbari,William C. Black,Han Cao,Alistair C. Darby,Catherine A. Hill,J. Spencer Johnston,Terence Murphy,Alexander S. Raikhel,David B. Sattelle,Igor V. Sharakhov,Igor V. Sharakhov,Bradley J. White,Li Zhao,Erez Lieberman Aiden,Erez Lieberman Aiden,Erez Lieberman Aiden,Richard S. Mann,Louis Lambrechts,Louis Lambrechts,Jeffrey R. Powell,Maria V. Sharakhova,Maria V. Sharakhova,Zhijian Tu,Hugh M. Robertson,Carolyn S. McBride,Alex Hastie,Jonas Korlach,Daniel E. Neafsey,Daniel E. Neafsey,Adam M. Phillippy,Leslie B. Vosshall,Leslie B. Vosshall +87 more
TL;DR: An improved, fully re-annotated Aedes aegypti genome assembly (AaegL5) provides insights into the sex-determining M locus, chemosensory systems that help mosquitoes to hunt humans and loci involved in insecticide resistance and will help to generate intervention strategies to fight this deadly disease vector.
Journal ArticleDOI
3D genomics across the tree of life reveals condensin II as a determinant of architecture type
Claire Hoencamp,Olga Dudchenko,Olga Dudchenko,Ahmed M.O. Elbatsh,Sumitabha Brahmachari,Jonne A. Raaijmakers,Tom van Schaik,Ángela Sedeño Cacciatore,Vinícius G. Contessoto,Vinícius G. Contessoto,Roy G.H.P. van Heesbeen,Bram van den Broek,Aditya N. Mhaskar,Hans Teunissen,Brian Glenn St Hilaire,David Weisz,Arina D. Omer,Melanie Pham,Zane Colaric,Zhenzhen Yang,Suhas S.P. Rao,Suhas S.P. Rao,Namita Mitra,Christopher Lui,Weijie Yao,Ruqayya Khan,Leonid L. Moroz,Andrea B. Kohn,Judy St. Leger,Alexandria Mena,Karen Holcroft,Maria Cristina Gambetta,Fabian Lim,Emma K. Farley,Nils Stein,Nils Stein,Nils Stein,Alexander Haddad,Daniel Chauss,Ayse Sena Mutlu,Meng C. Wang,Neil D. Young,Evin Hildebrandt,Hans H. Cheng,Christopher J. Knight,Theresa L.U. Burnham,Theresa L.U. Burnham,Kevin A. Hovel,Andrew J. Beel,Pierre Jean Mattei,Roger D. Kornberg,Wesley C. Warren,Gregory A. Cary,José Luis Gómez-Skarmeta,Veronica F. Hinman,Kerstin Lindblad-Toh,Kerstin Lindblad-Toh,Federica Di Palma,Kazuhiro Maeshima,Kazuhiro Maeshima,Asha S. Multani,Sen Pathak,Liesl Nel-Themaat,Richard R. Behringer,Parwinder Kaur,René H. Medema,Bas van Steensel,Elzo de Wit,José N. Onuchic,Michele Di Pierro,Michele Di Pierro,Erez Lieberman Aiden,Benjamin D. Rowland +72 more
TL;DR: In this paper, the authors investigated genome folding across the eukaryotic tree of life and found two types of three-dimensional (3D) genome architectures at the chromosome scale, each of which appears and disappears repeatedly during evolutionary evolution.
Journal ArticleDOI
The gene-rich genome of the scallop Pecten maximus
Nathan J. Kenny,Shane A. McCarthy,Olga Dudchenko,Olga Dudchenko,Katherine James,Emma Betteridge,Craig Corton,Jale Dolucan,Dan Mead,Karen Oliver,Arina D. Omer,Sarah Pelan,Yan Ryan,Yan Ryan,Ying Sims,Jason Skelton,Michelle Smith,James Torrance,David Weisz,Anil Wipat,Erez Lieberman Aiden,Kerstin Howe,Suzanne T. Williams +22 more
TL;DR: The genome assembly of P. maximus and its annotated gene set provide a high-quality platform for studies on such disparate topics as shell biomineralization, pigmentation, vision, and resistance to algal toxins.
Journal ArticleDOI
CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions.
Anjali Kaushal,Giriram Mohana,Julien Dorier,Isa Özdemir,Arina D. Omer,Pascal Cousin,Anastasiia Semenova,Michael Taschner,Oleksandr Dergai,Flavia Marzetta,Flavia Marzetta,Christian Iseli,Yossi Eliaz,Yossi Eliaz,Yossi Eliaz,David Weisz,Muhammad S. Shamim,Muhammad S. Shamim,Nicolas Guex,Erez Lieberman Aiden,Maria Cristina Gambetta +20 more
TL;DR: In this paper, the role of boundary-associated factor Cp190 and CTCF-dependent domains in Drosophila genome folding and transcriptional regulation in the central nervous system was examined.