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A roadmap for the Human Developmental Cell Atlas

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TLDR
The Human Developmental Cell Atlas (HDCA) project as discussed by the authors aims to create a comprehensive reference map of cells during development by mapping and modelling human development using state-of-the-art technologies.
Abstract
The Human Developmental Cell Atlas (HDCA) initiative, which is part of the Human Cell Atlas, aims to create a comprehensive reference map of cells during development. This will be critical to understanding normal organogenesis, the effect of mutations, environmental factors and infectious agents on human development, congenital and childhood disorders, and the cellular basis of ageing, cancer and regenerative medicine. Here we outline the HDCA initiative and the challenges of mapping and modelling human development using state-of-the-art technologies to create a reference atlas across gestation. Similar to the Human Genome Project, the HDCA will integrate the output from a growing community of scientists who are mapping human development into a unified atlas. We describe the early milestones that have been achieved and the use of human stem-cell-derived cultures, organoids and animal models to inform the HDCA, especially for prenatal tissues that are hard to acquire. Finally, we provide a roadmap towards a complete atlas of human development. This Perspective outlines the Human Developmental Cell Atlas initiative, which uses state-of-the-art technologies to map and model human development across gestation, and discusses the early milestones that have been achieved.

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Cells of the human intestinal tract mapped across space and time.

TL;DR: The cellular landscape of the human intestinal tract is dynamic throughout life, developing in utero and changing in response to functional requirements and environmental exposures as discussed by the authors, using single-cell RNA sequencing and antigen receptor analysis of almost half a million cells from up to 5 anatomical regions of the developing and up to 11 distinct anatomical regions in the healthy human gut.
Journal ArticleDOI

What is a cell type and how to define it?

Hongkui Zeng
- 01 Jul 2022 - 
TL;DR: An overview of the basic principles of cell types rooted in evolution and development and approaches to characterize and classify cell types and investigate how they contribute to the organism's function, using the mammalian brain as a primary example as mentioned in this paper .
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Early human embryonic development: Blastocyst formation to gastrulation.

TL;DR: Rossant and Tam as mentioned in this paper discuss new insights into human embryogenesis gathered from successes in culturing human embryos in vitro and stem-cell-based embryo models, and outline what questions still need answering.
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ConsensusPathDB 2022: molecular interactions update as a resource for network biology.

TL;DR: ConsensusPathDB (http://consensuspathdb.org) is a meta-database combining interactions of diverse types from 31 public resources for humans, 16 for mice and 14 for yeasts as discussed by the authors.
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Generation and characterization of hair-bearing skin organoids from human pluripotent stem cells

TL;DR: In this article , a detailed protocol for generating hair-bearing skin tissue entirely from a homogeneous population of human pluripotent stem cells in a three-dimensional in vitro culture system is described.
References
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Journal ArticleDOI

Single-cell genomics identifies cell type-specific molecular changes in autism.

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Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors

TL;DR: It is determined that Wilms tumor, a pediatric kidney cancer, originates from aberrant fetal cells, whereas adult kidney cancers are likely derived from a specific subtype of proximal convoluted tubular cell.
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The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution

TL;DR: A microfluidics-based single-cell RNA sequencing method capable of efficiently profiling tens of thousands of individual transcriptomes was developed and focused on the western claw-toed frog, Xenopus tropicalis, which serves as one of the best-studied model systems of early vertebrate development.
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Defining the three cell lineages of the human blastocyst by single-cell RNA-seq

TL;DR: Analysis of single-cell RNA-sequencing of human and mouse embryos reveals conserved and human-specific transcriptional programmes as well as a functional requirement for TGFβ signalling in human embryos.