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A roadmap for the Human Developmental Cell Atlas

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TLDR
The Human Developmental Cell Atlas (HDCA) project as discussed by the authors aims to create a comprehensive reference map of cells during development by mapping and modelling human development using state-of-the-art technologies.
Abstract
The Human Developmental Cell Atlas (HDCA) initiative, which is part of the Human Cell Atlas, aims to create a comprehensive reference map of cells during development. This will be critical to understanding normal organogenesis, the effect of mutations, environmental factors and infectious agents on human development, congenital and childhood disorders, and the cellular basis of ageing, cancer and regenerative medicine. Here we outline the HDCA initiative and the challenges of mapping and modelling human development using state-of-the-art technologies to create a reference atlas across gestation. Similar to the Human Genome Project, the HDCA will integrate the output from a growing community of scientists who are mapping human development into a unified atlas. We describe the early milestones that have been achieved and the use of human stem-cell-derived cultures, organoids and animal models to inform the HDCA, especially for prenatal tissues that are hard to acquire. Finally, we provide a roadmap towards a complete atlas of human development. This Perspective outlines the Human Developmental Cell Atlas initiative, which uses state-of-the-art technologies to map and model human development across gestation, and discusses the early milestones that have been achieved.

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Cells of the human intestinal tract mapped across space and time.

TL;DR: The cellular landscape of the human intestinal tract is dynamic throughout life, developing in utero and changing in response to functional requirements and environmental exposures as discussed by the authors, using single-cell RNA sequencing and antigen receptor analysis of almost half a million cells from up to 5 anatomical regions of the developing and up to 11 distinct anatomical regions in the healthy human gut.
Journal ArticleDOI

What is a cell type and how to define it?

Hongkui Zeng
- 01 Jul 2022 - 
TL;DR: An overview of the basic principles of cell types rooted in evolution and development and approaches to characterize and classify cell types and investigate how they contribute to the organism's function, using the mammalian brain as a primary example as mentioned in this paper .
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Early human embryonic development: Blastocyst formation to gastrulation.

TL;DR: Rossant and Tam as mentioned in this paper discuss new insights into human embryogenesis gathered from successes in culturing human embryos in vitro and stem-cell-based embryo models, and outline what questions still need answering.
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ConsensusPathDB 2022: molecular interactions update as a resource for network biology.

TL;DR: ConsensusPathDB (http://consensuspathdb.org) is a meta-database combining interactions of diverse types from 31 public resources for humans, 16 for mice and 14 for yeasts as discussed by the authors.
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Generation and characterization of hair-bearing skin organoids from human pluripotent stem cells

TL;DR: In this article , a detailed protocol for generating hair-bearing skin tissue entirely from a homogeneous population of human pluripotent stem cells in a three-dimensional in vitro culture system is described.
References
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Journal ArticleDOI

Mechanical impact of epithelial−mesenchymal transition on epithelial morphogenesis in Drosophila

TL;DR: It is shown that at the initiation of the EMT process, cells produce an apico-basal force, orthogonal to the surface of the epithelium, that constitutes an important driving force for tissue invagination in Drosophila.
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The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution

Deanne Taylor, +82 more
- 08 Apr 2019 - 
TL;DR: The case for a Pediatric Cell Atlas as part of the Human Cell Atlas consortium to provide single-cell profiles and spatial characterization of gene expression across human tissues and organs is discussed.
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Blastocyst-like structures generated from human pluripotent stem cells

TL;DR: In this article, the authors developed an effective three-dimensional culture strategy with successive lineage differentiation and self-organization to generate blastocyst-like structures in vitro, which they termed human blastoids.
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Cognitive phenotype and psychiatric disorder in 22q11.2 deletion syndrome: A review.

TL;DR: Future research into factors leading to psychiatric disorder in people with 22q11DS should include assessment of social and psychological factors including life events, symptoms associated with trauma, attachment, and self-esteem, which together with cognitive risk factors may mediate mental health outcome.