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Open AccessJournal ArticleDOI

Bayesian estimation of the global biogeographical history of the Solanaceae

TLDR
Maximum likelihood methods and newly developed biogeographical stochastic mapping methods are applied to infer the ancestral range of the tomato family Solanaceae and to estimate the frequency of dispersal and vicariance events resulting in its present‐day distribution.
Abstract
Aim The tomato family Solanaceae is distributed on all major continents except Antarctica and has its centre of diversity in South America. Its worldwide distribution suggests multiple long-distance dispersals within and between the New and Old Worlds. Here, we apply maximum likelihood (ML) methods and newly developed biogeographical stochastic mapping (BSM) to infer the ancestral range of the family and to estimate the frequency of dispersal and vicariance events resulting in its present-day distribution. Location Worldwide. Methods Building on a recently inferred megaphylogeny of Solanaceae, we conducted ML model fitting of a range of biogeographical models with the program ‘BioGeoBEARS’. We used the parameters from the best fitting model to estimate ancestral range probabilities and conduct stochastic mapping, from which we estimated the number and type of biogeographical events. Results Our best model supported South America as the ancestral area for the Solanaceae and its major clades. The BSM analyses showed that dispersal events, particularly range expansions, are the principal mode by which members of the family have spread beyond South America. Main conclusions For Solanaceae, South America is not only the family's current centre of diversity but also its ancestral range, and dispersal was the principal driver of range evolution. The most common dispersal patterns involved range expansions from South America into North and Central America, while dispersal in the reverse direction was less common. This directionality may be due to the early build-up of species richness in South America, resulting in large pool of potential migrants. These results demonstrate the utility of BSM not only for estimating ancestral ranges but also in inferring the frequency, direction and timing of biogeographical events in a statistically rigorous framework.

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A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversifications throughout the history of Asteraceae

TL;DR: This study places the origin of Asteraceae at ∼83 MYA in the late Cretaceous and reveals that the family underwent a series of explosive radiations during the Eocene which were accompanied by accelerations in diversification rates.
Journal ArticleDOI

Fast diversification through a mosaic of evolutionary histories characterizes the endemic flora of ancient Neotropical mountains

TL;DR: Analysis of plant diversification dynamics in the campo rupestre, an ecosystem associated with pre-Cambrian mountaintops and highlands of eastern South America, shows a general trend for higher diversification rates associated with these areas, but endemism may also increase or reduce extinction rates, depending on the group.
Journal ArticleDOI

Retracing the Hawaiian silversword radiation despite phylogenetic, biogeographic, and paleogeographic uncertainty

TL;DR: Applying an event‐based test of the progression rule of island biogeography, strong evidence is found that the dispersal process favors old‐to‐young directionality, but strong evidence for diversification continuing unabated into later phases of island ontogeny, particularly for Kauaʻi.
Journal ArticleDOI

A tale of worldwide success: behind the scenes of Carex (Cyperaceae) biogeography and diversification

TL;DR: The most comprehensive Carex-dated phylogeny based on three markers (ETS-ITS-matK) using a previous phylogenomic Hyb-Seq framework, and a sampling of two-thirds of its species and all recognized sections was presented in this article.
References
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Journal Article

R: A language and environment for statistical computing.

R Core Team
- 01 Jan 2014 - 
TL;DR: Copyright (©) 1999–2012 R Foundation for Statistical Computing; permission is granted to make and distribute verbatim copies of this manual provided the copyright notice and permission notice are preserved on all copies.
Book

Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach

TL;DR: The second edition of this book is unique in that it focuses on methods for making formal statistical inference from all the models in an a priori set (Multi-Model Inference).
Journal ArticleDOI

APE: Analyses of Phylogenetics and Evolution in R language

TL;DR: UNLABELLED Analysis of Phylogenetics and Evolution (APE) is a package written in the R language for use in molecular evolution and phylogenetics that provides both utility functions for reading and writing data and manipulating phylogenetic trees.
Journal ArticleDOI

Herbivores and the Number of Tree Species in Tropical Forests

TL;DR: Any event that increases the efficiency of the predators at eating seeds and seedlings of a given tree species may lead to a reduction in population density of the adults of that species and/or to increased distance between new adults and their parents.
Journal ArticleDOI

The tomato genome sequence provides insights into fleshy fruit evolution

Shusei Sato, +323 more
- 31 May 2012 - 
TL;DR: A high-quality genome sequence of domesticated tomato is presented, a draft sequence of its closest wild relative, Solanum pimpinellifolium, is compared, and the two tomato genomes are compared to each other and to the potato genome.
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