Bayesian estimation of the global biogeographical history of the Solanaceae
Julia Dupin,Nicholas J. Matzke,Tiina Särkinen,Sandra Knapp,Richard G. Olmstead,Lynn Bohs,Stacey D. Smith +6 more
TLDR
Maximum likelihood methods and newly developed biogeographical stochastic mapping methods are applied to infer the ancestral range of the tomato family Solanaceae and to estimate the frequency of dispersal and vicariance events resulting in its present‐day distribution.Abstract:
Aim
The tomato family Solanaceae is distributed on all major continents except Antarctica and has its centre of diversity in South America. Its worldwide distribution suggests multiple long-distance dispersals within and between the New and Old Worlds. Here, we apply maximum likelihood (ML) methods and newly developed biogeographical stochastic mapping (BSM) to infer the ancestral range of the family and to estimate the frequency of dispersal and vicariance events resulting in its present-day distribution.
Location
Worldwide.
Methods
Building on a recently inferred megaphylogeny of Solanaceae, we conducted ML model fitting of a range of biogeographical models with the program ‘BioGeoBEARS’. We used the parameters from the best fitting model to estimate ancestral range probabilities and conduct stochastic mapping, from which we estimated the number and type of biogeographical events.
Results
Our best model supported South America as the ancestral area for the Solanaceae and its major clades. The BSM analyses showed that dispersal events, particularly range expansions, are the principal mode by which members of the family have spread beyond South America.
Main conclusions
For Solanaceae, South America is not only the family's current centre of diversity but also its ancestral range, and dispersal was the principal driver of range evolution. The most common dispersal patterns involved range expansions from South America into North and Central America, while dispersal in the reverse direction was less common. This directionality may be due to the early build-up of species richness in South America, resulting in large pool of potential migrants. These results demonstrate the utility of BSM not only for estimating ancestral ranges but also in inferring the frequency, direction and timing of biogeographical events in a statistically rigorous framework.read more
Citations
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Journal ArticleDOI
A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversifications throughout the history of Asteraceae
Jennifer R. Mandel,Rebecca B. Dikow,Carolina M. Siniscalchi,Ramhari Thapa,Linda E. Watson,Vicki A. Funk +5 more
TL;DR: This study places the origin of Asteraceae at ∼83 MYA in the late Cretaceous and reveals that the family underwent a series of explosive radiations during the Eocene which were accompanied by accelerations in diversification rates.
Journal ArticleDOI
The evolution of a tropical biodiversity hotspot
Michael G. Harvey,Michael G. Harvey,Gustavo A. Bravo,Gustavo A. Bravo,Santiago Claramunt,Santiago Claramunt,Santiago Claramunt,Andrés M. Cuervo,Andrés M. Cuervo,Graham E. Derryberry,Graham E. Derryberry,Jaqueline Battilana,Glenn F. Seeholzer,Glenn F. Seeholzer,Jessica McKay,Brian C. O'Meara,Brant C. Faircloth,Scott V. Edwards,Jorge L. Pérez-Emán,Robert G. Moyle,Frederick H. Sheldon,Alexandre Aleixo,Alexandre Aleixo,Brian Tilston Smith,R. Terry Chesser,R. Terry Chesser,Luís Fábio Silveira,Joel Cracraft,Robb T. Brumfield,Elizabeth P. Derryberry,Elizabeth P. Derryberry +30 more
TL;DR: It is observed that higher and more constant speciation rates occur in harsh environments relative to the tropics, and the results reveal a model in which species are forming faster in environmental extremes but have accumulated in moderate environments to form tropical biodiversity hotspots.
Journal ArticleDOI
Fast diversification through a mosaic of evolutionary histories characterizes the endemic flora of ancient Neotropical mountains
Thais N. C. Vasconcelos,Thais N. C. Vasconcelos,Suzana Alcantara,Caroline Oliveira Andrino,Félix Forest,Marcelo Reginato,Marcelo F. Simon,José Rubens Pirani +7 more
TL;DR: Analysis of plant diversification dynamics in the campo rupestre, an ecosystem associated with pre-Cambrian mountaintops and highlands of eastern South America, shows a general trend for higher diversification rates associated with these areas, but endemism may also increase or reduce extinction rates, depending on the group.
Journal ArticleDOI
Retracing the Hawaiian silversword radiation despite phylogenetic, biogeographic, and paleogeographic uncertainty
TL;DR: Applying an event‐based test of the progression rule of island biogeography, strong evidence is found that the dispersal process favors old‐to‐young directionality, but strong evidence for diversification continuing unabated into later phases of island ontogeny, particularly for Kauaʻi.
Journal ArticleDOI
A tale of worldwide success: behind the scenes of Carex (Cyperaceae) biogeography and diversification
Santiago Martín-Bravo,Santiago Martín-Bravo,Pedro Jiménez-Mejías,Pedro Jiménez-Mejías,Tamara Villaverde,Marcial Escudero,Marlene Hahn,Daniel Spalink,Eric H. Roalson,Andrew L. Hipp,Carmen Benítez-Benítez,Leo P. Bruederle,Elisabeth Fitzek,Bruce A. Ford,Bruce A. Ford,Kerry A. Ford,Mira Garner,Sebastian Gebauer,Sebastian Gebauer,Matthias H. Hoffmann,Xiao-Feng Jin,Isabel Larridon,Étienne Léveillé-Bourret,Étienne Léveillé-Bourret,Yi-Fei Lu,Modesto Luceño,Enrique Maguilla,José Ignacio Márquez-Corro,Mónica Míguez,Robert F. C. Naczi,A. A. Reznicek,Julian R. Starr +31 more
TL;DR: The most comprehensive Carex-dated phylogeny based on three markers (ETS-ITS-matK) using a previous phylogenomic Hyb-Seq framework, and a sampling of two-thirds of its species and all recognized sections was presented in this article.
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The tomato genome sequence provides insights into fleshy fruit evolution
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TL;DR: A high-quality genome sequence of domesticated tomato is presented, a draft sequence of its closest wild relative, Solanum pimpinellifolium, is compared, and the two tomato genomes are compared to each other and to the potato genome.