B
Barbara Robbertse
Researcher at National Institutes of Health
Publications - 30
Citations - 9738
Barbara Robbertse is an academic researcher from National Institutes of Health. The author has contributed to research in topics: Genome & RefSeq. The author has an hindex of 22, co-authored 29 publications receiving 7277 citations. Previous affiliations of Barbara Robbertse include Oregon State University & Cornell University.
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Journal ArticleDOI
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary,Mathew W. Wright,J. Rodney Brister,Stacy Ciufo,Diana Haddad,Richard McVeigh,Bhanu Rajput,Barbara Robbertse,Brian Smith-White,Danso Ako-adjei,Alexander Astashyn,Azat Badretdin,Yiming Bao,Olga Blinkova,Vyacheslav Brover,Vyacheslav Chetvernin,Jinna Choi,Eric Cox,Olga Ermolaeva,Catherine M. Farrell,Tamara Goldfarb,Tripti Gupta,Daniel H. Haft,Eneida L. Hatcher,Wratko Hlavina,Vinita Joardar,Vamsi K. Kodali,Wenjun Li,Donna Maglott,Patrick Masterson,Kelly M. McGarvey,Michael R. Murphy,Kathleen O'Neill,Shashikant Pujar,Sanjida H. Rangwala,Daniel Rausch,Lillian D. Riddick,Conrad L. Schoch,Andrei Shkeda,Susan S. Storz,Hanzhen Sun,Françoise Thibaud-Nissen,Igor Tolstoy,Raymond E. Tully,Anjana R. Vatsan,Craig Wallin,David Webb,Wendy Wu,Melissa J. Landrum,Avi Kimchi,Tatiana Tatusova,Michael DiCuccio,Paul Kitts,Terence Murphy,Kim D. Pruitt +54 more
TL;DR: The approach to utilizing available RNA-Seq and other data types in the authors' manual curation process for vertebrate, plant, and other species is summarized, and a new direction for prokaryotic genomes and protein name management is described.
Journal ArticleDOI
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).
Diego Martinez,Diego Martinez,Randy M. Berka,Bernard Henrissat,Markku Saloheimo,Mikko Arvas,Scott E. Baker,Jarod Chapman,Olga Chertkov,Pedro M. Coutinho,Dan Cullen,Etienne Danchin,Igor V. Grigoriev,Paul Harris,Melissa Jackson,Christian P. Kubicek,Cliff Han,Isaac Ho,Luis F. Larrondo,Alfredo Lopez de Leon,Jon K. Magnuson,Sandy Merino,Monica Misra,Beth Nelson,Nicholas H. Putnam,Barbara Robbertse,Asaf Salamov,Monika Schmoll,Astrid Terry,Nina Thayer,Ann Westerholm-Parvinen,Conrad L. Schoch,Jian Yao,Ravi D. Barabote,Mary Anne Nelson,Chris Detter,David Bruce,Cheryl R. Kuske,Gary Xie,Paul G. Richardson,Daniel S. Rokhsar,Susan Lucas,Edward M. Rubin,Nigel Dunn-Coleman,Michael Ward,Thomas Brettin +45 more
TL;DR: This work assembled 89 scaffolds to generate 34 Mbp of nearly contiguous T. reesei genome sequence comprising 9,129 predicted gene models, providing a roadmap for constructing enhanced T.Reesei strains for industrial applications such as biofuel production.
Journal ArticleDOI
NCBI Taxonomy: a comprehensive update on curation, resources and tools.
Conrad L. Schoch,Stacy Ciufo,Mikhail Domrachev,Carol L. Hotton,Sivakumar Kannan,Rogneda Khovanskaya,Detlef D. Leipe,Richard McVeigh,Kathleen O'Neill,Barbara Robbertse,Shobha Sharma,Vladimir Soussov,John P. Sullivan,Lu Sun,Seán Turner,Ilene Karsch-Mizrachi +15 more
TL;DR: The National Center for Biotechnology Information (NCBI) Taxonomy includes organism names and classifications for every sequence in the nucleotide and protein sequence databases of the International Nucleotide Sequence Database Collaboration.
Journal ArticleDOI
The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits
Conrad L. Schoch,Gi-Ho Sung,Francesc López-Giráldez,Jeffrey P. Townsend,Jolanta Miadlikowska,Valérie Hofstetter,Barbara Robbertse,P. Brandon Matheny,P. Brandon Matheny,Frank Kauff,Zheng Wang,Cécile Gueidan,Rachael M. Andrie,Kristin M. Trippe,Linda M. Ciufetti,Anja Amtoft Wynns,Emily Fraker,Brendan P. Hodkinson,Gregory Bonito,Johannes Z. Groenewald,Mahdi Arzanlou,Mahdi Arzanlou,G. Sybren de Hoog,Pedro W. Crous,David Hewitt,Donald H. Pfister,Kristin R. Peterson,Marieka Gryzenhout,Michael J. Wingfield,André Aptroot,Sung-Oui Suh,Meredith Blackwell,David M. Hillis,Gareth W. Griffith,Lisa A. Castlebury,Amy Y. Rossman,H. Thorsten Lumbsch,Robert Lücking,Burkhard Büdel,Alexandra Rauhut,Paul Diederich,Damien Ertz,David M. Geiser,Kentaro Hosaka,Patrik Inderbitzin,Jan Kohlmeyer,Brigitte Volkmann-Kohlmeyer,Lizel Mostert,Kerry O'Donnell,Harrie J. M. Sipman,Jack D. Rogers,R. A. Shoemaker,Junta Sugiyama,Richard C. Summerbell,Wendy A. Untereiner,Peter R. Johnston,Soili Stenroos,Alga Zuccaro,Paul S. Dyer,Peter D. Crittenden,Mariette S. Cole,Karen Hansen,James M. Trappe,Rebecca Yahr,Franois Lutzoni,Joseph W. Spatafora +65 more
TL;DR: A 6-gene, 420-species maximum-likelihood phylogeny of Ascomycota, the largest phylum of Fungi, and a phylogenetic informativeness analysis of all 6 genes and a series of ancestral character state reconstructions support a terrestrial, saprobic ecology as ancestral are presented.
Journal ArticleDOI
A class-wide phylogenetic assessment of Dothideomycetes
Conrad L. Schoch,Pedro W. Crous,Johannes Z. Groenewald,Eric W.A. Boehm,Treena I. Burgess,J. de Gruyter,G.S. de Hoog,L. J. Dixon,Martin Grube,Cécile Gueidan,Yukio Harada,Satoshi Hatakeyama,Kazuyuki Hirayama,Tsuyoshi Hosoya,Sabine M. Huhndorf,Kevin D. Hyde,E. B. G. Jones,Jan Kohlmeyer,Åsa Kruys,Y. M. Li,Robert Lücking,H. T. Lumbsch,Ludmila Marvanová,Joelle Mbatchou,A. H.. McVay,Andrew N. Miller,G. K. Mugambi,Lucia Muggia,Matthew P. Nelsen,P. Nelson,C. A. Owensby,Alan J. L. Phillips,Souwalak Phongpaichit,Stephen B. Pointing,V. Pujade-Renaud,Huzefa A. Raja,E. Rivas Plata,Barbara Robbertse,Constantino Ruibal,Jariya Sakayaroj,Teruo Sano,Laura Selbmann,Carol A. Shearer,Takashi Shirouzu,Bernard Slippers,S. Suetrong,S. Suetrong,Kazuaki Tanaka,Brigitte Volkmann-Kohlmeyer,Michael J. Wingfield,Alan R. Wood,J.H.C. Woudenberg,H. Yonezawa,Ying Zhang,Joseph W. Spatafora +54 more
TL;DR: A genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon.