M
Manolis Kellis
Researcher at Massachusetts Institute of Technology
Publications - 448
Citations - 132627
Manolis Kellis is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 128, co-authored 405 publications receiving 112181 citations. Previous affiliations of Manolis Kellis include Broad Institute & Epigenomics AG.
Papers
More filters
Journal ArticleDOI
Stop codon readthrough generates a C-terminally extended variant of the human vitamin D receptor with reduced calcitriol response.
Gary Loughran,Irwin Jungreis,Ioanna Tzani,Michael Power,Ruslan I. Dmitriev,Ivaylo Ivanov,Manolis Kellis,John F. Atkins,John F. Atkins +8 more
TL;DR: The readthrough efficiency of the annotated stop codon for the sequence encoding vitamin D receptor (VDR), a member of the nuclear receptor superfamily of ligand-inducible transcription factors, was the highest of those tested but all showed notable levels of readthrough.
Posted ContentDOI
Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes
Esther Rheinbay,Morten Muhlig Nielsen,Federico Abascal,Grace Tiao,Henrik Hornshøj,Julian M. Hess,Randi Istrup Istrup Pedersen,Lars Feuerbach,Radhakrishnan Sabarinathan,Henrik Tobias Madsen,Jaegil Kim,Loris Mularoni,Shimin Shuai,Andrés Arturo Lanzós Camaioni,Carl Herrmann,Yosef E. Maruvka,Ciyue Shen,Samir B. Amin,Johanna Bertl,Priyanka Dhingra,Klev Diamanti,Abel Gonzalez-Perez,Qianyun Guo,Nicholas J. Haradhvala,Keren Isaev,Malene Juul,Jan Komorowski,Sushant Kumar,Dong-Hoon Lee,Lucas Lochovsky,Eric Minwei Liu,Oriol Pich,David Tamborero,Husen M. Umer,Liis Uusküla-Reimand,Claes Wadelius,Lina Wadi,Jing Zhang,Keith A. Boroevich,Joana Carlevaro-Fita,Dimple Chakravarty,Calvin Wing Yiu Chan,Nuno A. Fonseca,Mark P. Hamilton,Chen Hong,André Kahles,Young-Wook Kim,Kjong-Van Lehmann,Todd A. Johnson,Abdullah Kahraman,Keunchil Park,Gordon Saksena,Lina Sieverling,Nicholas A Sinnott-Armstrong,Peter J. Campbell,Asger Hobolth,Manolis Kellis,Michael S. Lawrence,Ben Raphael,Mark A. Rubin,Chris Sander,Lincoln Stein,Josh Stuart,Tatsuhiko Tsunoda,David A. Wheeler,Rory Johnson,Jüri Reimand,Mark Gerstein,Ekta Khurana,Nuria Lopez-Bigas,Inigo Martincorena,Jakob Skou Pedersen,Gad Getz,Pcawg Drivers,Icgc +74 more
TL;DR: These analyses redefine the landscape of non-coding driver mutations in cancer genomes, confirming a few previously reported elements and raising doubts about others, while identifying novel candidate elements across 27 cancer types.
Journal ArticleDOI
Loose ends: almost one in five human genes still have unresolved coding status
Federico Abascal,David Juan,Irwin Jungreis,Manolis Kellis,Laura Martinez,Maria Rigau,Jose Manuel Rodriguez,Jesús Vázquez,Michael L. Tress +8 more
TL;DR: An in-depth investigation on the 2764 genes classified as coding by one or more sets of manual curators and not coding by others suggests that most are not under protein-like purifying selection and so are unlikely to code for functional proteins.
Journal ArticleDOI
Challenges in IBD Research: Environmental Triggers.
Shuk-Mei Ho,James D. Lewis,Emeran A. Mayer,Charles N. Bernstein,Scott E. Plevy,Emil Chuang,Stephen M. Rappaport,Kenneth Croitoru,Joshua R. Korzenik,Jeffrey P. Krischer,Jeffrey S. Hyams,Richard S. Judson,Manolis Kellis,Michael Jerrett,Gary W. Miller,Melanie L Grant,Nataly Shtraizent,Gerard Honig,Andrés Hurtado-Lorenzo,Gary D. Wu +19 more
TL;DR: The implementation of longitudinal prospective studies to determine disease evolution and identify sub-clinical changes in response to exposures is proposed, which can help define critical windows of vulnerability and risk prediction and lead to identification of biomarkers of exposures and new modalities for therapeutic intervention.
Pareto-optimal phylogenetic tree reconciliation
TL;DR: In this article, an efficient algorithm for computing Pareto-optimal sets of reconciliations was proposed, thus providing the first systematic method for understanding the relationship between event costs and reconciliation.