M
Mauricio Reyes
Researcher at University of Bern
Publications - 247
Citations - 14384
Mauricio Reyes is an academic researcher from University of Bern. The author has contributed to research in topics: Segmentation & Computer science. The author has an hindex of 38, co-authored 223 publications receiving 10031 citations. Previous affiliations of Mauricio Reyes include Analysis Group & French Institute for Research in Computer Science and Automation.
Papers
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Journal ArticleDOI
The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)
Bjoern H. Menze,Andras Jakab,Stefan Bauer,Jayashree Kalpathy-Cramer,Keyvan Farahani,Justin Kirby,Yuliya Burren,N Porz,Johannes Slotboom,Roland Wiest,Levente Lanczi,Elizabeth R. Gerstner,Marc-André Weber,Tal Arbel,Brian B. Avants,Nicholas Ayache,Patricia Buendia,D. Louis Collins,Nicolas Cordier,Jason J. Corso,Antonio Criminisi,Tilak Das,Hervé Delingette,Çağatay Demiralp,Christopher R. Durst,Michel Dojat,Senan Doyle,Joana Festa,Florence Forbes,Ezequiel Geremia,Ben Glocker,Polina Golland,Xiaotao Guo,Andac Hamamci,Khan M. Iftekharuddin,Raj Jena,Nigel M. John,Ender Konukoglu,Danial Lashkari,José Mariz,Raphael Meier,Sérgio Pereira,Doina Precup,Stephen J. Price,Tammy Riklin Raviv,Syed M. S. Reza,Michael Ryan,Duygu Sarikaya,Lawrence H. Schwartz,Hoo-Chang Shin,Jamie Shotton,Carlos A. Silva,Nuno Sousa,Nagesh K. Subbanna,Gábor Székely,Thomas J. Taylor,Owen M. Thomas,Nicholas J. Tustison,Gozde Unal,Flor Vasseur,Max Wintermark,Dong Hye Ye,Liang Zhao,Binsheng Zhao,Darko Zikic,Marcel Prastawa,Mauricio Reyes,Koen Van Leemput +67 more
TL;DR: The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS) as mentioned in this paper was organized in conjunction with the MICCAI 2012 and 2013 conferences, and twenty state-of-the-art tumor segmentation algorithms were applied to a set of 65 multi-contrast MR scans of low and high grade glioma patients.
Journal ArticleDOI
The Multimodal Brain TumorImage Segmentation Benchmark (BRATS)
TL;DR: The set-up and results of the Multimodal Brain Tumor Image Segmentation Benchmark (BRATS) organized in conjunction with the MICCAI 2012 and 2013 conferences are reported, finding that different algorithms worked best for different sub-regions, but that no single algorithm ranked in the top for all sub-Regions simultaneously.
Posted ContentDOI
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
Spyridon Bakas,Mauricio Reyes,Andras Jakab,Stefan Bauer,Markus Rempfler,Alessandro Crimi,Russell T. Shinohara,Christoph Berger,Sung Min Ha,Martin Rozycki,Marcel Prastawa,Esther Alberts,Jana Lipkova,John Freymann,John Freymann,Justin Kirby,Justin Kirby,Michel Bilello,Hassan M. Fathallah-Shaykh,Roland Wiest,Jan S. Kirschke,Benedikt Wiestler,Rivka R. Colen,Aikaterini Kotrotsou,Pamela LaMontagne,Daniel S. Marcus,Mikhail Milchenko,Arash Nazeri,Marc-André Weber,Abhishek Mahajan,Ujjwal Baid,Elizabeth R. Gerstner,Dongjin Kwon,Gagan Acharya,Manu Agarwal,M. S. Alam,Alberto Albiol,Antonio Albiol,F. Albiol,Varghese Alex,Nigel M. Allinson,Pedro H. A. Amorim,Abhijit Amrutkar,Ganesh Anand,Simon Andermatt,Tal Arbel,Pablo Arbeláez,Aaron Avery,Muneeza Azmat,B. Pranjal,Wenjia Bai,Subhashis Banerjee,Subhashis Banerjee,Bill Barth,Thomas Batchelder,Kayhan Batmanghelich,Enzo Battistella,Enzo Battistella,Andrew Beers,Mikhail Belyaev,Martin Bendszus,Eze Benson,Jose Bernal,H. N. Bharath,George Biros,Sotirios Bisdas,James M. Brown,Mariano Cabezas,Shilei Cao,Jorge Cardoso,Eric Carver,Adrià Casamitjana,Laura Silvana Castillo,Marcel Catà,Philippe C. Cattin,Albert Cerigues,Vinicius S. Chagas,Siddhartha Chandra,Yi-Ju Chang,Shiyu Chang,Ken Chang,Joseph Chazalon,Shengcong Chen,Wei Chen,Jefferson W. Chen,Zhaolin Chen,Kun Cheng,Ahana Roy Choudhury,Roger Chylla,Albert Clèrigues,Steven Colleman,Ramiro German Rodriguez Colmeiro,Ramiro German Rodriguez Colmeiro,Marc Combalia,Anthony Costa,Xiaomeng Cui,Zhenzhen Dai,Lutao Dai,Laura Alexandra Daza,Eric Deutsch,Changxing Ding,Chao Dong,Shidu Dong,Wojciech Dudzik,Zach Eaton-Rosen,Gary F. Egan,Guilherme Escudero,Théo Estienne,Théo Estienne,Richard M. Everson,Jonathan Fabrizio,Yong Fan,Longwei Fang,Xue Feng,Enzo Ferrante,Lucas Fidon,Martin H. Fischer,Andrew P. French,Naomi Fridman,Huan Fu,David Fuentes,Yaozong Gao,Evan Gates,David T. Gering,Amir Gholami,Willi Gierke,Ben Glocker,Mingming Gong,Mingming Gong,Sandra González-Villà,Thomas Grosges,Yuanfang Guan,Sheng Guo,Sudeep Gupta,Woo-Sup Han,Il Song Han,Konstantin Harmuth,Huiguang He,Aura Hernández-Sabaté,Evelyn Herrmann,Naveen Himthani,Winston H. Hsu,Cheyu Hsu,Hu Xiaojun,Xiaobin Hu,Yan Hu,Yifan Hu,Rui Hua,Teng-Yi Huang,Weilin Huang,Sabine Van Huffel,Quan Huo,Vivek Hv,Khan M. Iftekharuddin,Fabian Isensee,Mobarakol Islam,Aaron S. Jackson,Sachin Jambawalikar,Andrew Jesson,Weijian Jian,Peter H. Jin,V Jeya Maria Jose,V Jeya Maria Jose,Alain Jungo,Bernhard Kainz,Konstantinos Kamnitsas,Po-Yu Kao,Ayush Karnawat,Thomas Kellermeier,Adel Kermi,Kurt Keutzer,Mohamed Tarek Khadir,Mahendra Khened,Philipp Kickingereder,Geena Kim,Nik King,Haley Knapp,Urspeter Knecht,Lisa Kohli,Deren Kong,Xiangmao Kong,Simon Koppers,Avinash Kori,Ganapathy Krishnamurthi,Egor Krivov,Piyush Kumar,Kaisar Kushibar,Dmitrii Lachinov,Dmitrii Lachinov,Tryphon Lambrou,Joon Lee,Chengen Lee,Yuehchou Lee,Matthew C. H. Lee,Szidónia Lefkovits,László Lefkovits,James Levitt,Tengfei Li,Hongwei Li,Wenqi Li,Wenqi Li,Hongyang Li,Xiaochuan Li,Yuexiang Li,Heng Li,Zhenye Li,Xiaoyu Li,Zeju Li,XiaoGang Li,Zheng-Shen Lin,Fengming Lin,Pietro Liò,C Liu,Boqiang Liu,Xiang Liu,Mingyuan Liu,Ju Liu,Luyan Liu,Xavier Lladó,Marc Moreno Lopez,Pablo Ribalta Lorenzo,Zhentai Lu,Lin Luo,Zhigang Luo,Jun Ma,Kai Ma,Thomas Mackie,Anant Madabushi,Issam Mahmoudi,Klaus H. Maier-Hein,Pradipta Maji,C. P. Mammen,Andreas Mang,B.S. Manjunath,M. Marcinkiewicz,Steven McDonagh,Stephen J. McKenna,Richard McKinley,Miriam Mehl,Sachin Mehta,Raghav Mehta,Raphael Meier,Christoph Meinel,Dorit Merhof,Craig H. Meyer,Robert F. Miller,Sushmita Mitra,Aliasgar Moiyadi,David Molina-García,Miguel Monteiro,Grzegorz Mrukwa,Andriy Myronenko,Jakub Nalepa,Thuyen Ngo,Dong Nie,Holly Ning,Chen Niu,Nicholas Nuechterlein,Eric K. Oermann,Arlindo L. Oliveira,Arlindo L. Oliveira,Diego D. C. Oliveira,Arnau Oliver,Alexander F. I. Osman,Yu-Nian Ou,Sebastien Ourselin,Nikos Paragios,Moo Sung Park,Brad Paschke,J. Gregory Pauloski,Kamlesh Pawar,Nick Pawlowski,Linmin Pei,Suting Peng,Silvio M. Pereira,Julián Pérez-Beteta,Víctor M. Pérez-García,Simon Pezold,Bao Pham,Ashish Phophalia,Gemma Piella,G. N. Pillai,Marie Piraud,Maxim Pisov,Anmol Popli,Michael P. Pound,Reza Pourreza,Prateek Prasanna,Vesna Prkovska,Tony P. Pridmore,Santi Puch,Elodie Puybareau,Buyue Qian,Xu Qiao,Martin Rajchl,Swapnil Rane,Michael Rebsamen,Hongliang Ren,Xuhua Ren,Karthik Revanuru,Mina Rezaei,Oliver Rippel,Luis Carlos Rivera,Charlotte Robert,Bruce R. Rosen,Daniel Rueckert,Mohammed Safwan,Mostafa Salem,Joaquim Salvi,Irina Sánchez,Heitor M. Santos,Emmett Sartor,Dawid Schellingerhout,Klaudius Scheufele,Matthew R. Scott,Artur A. Scussel,Sara Sedlar,Juan Pablo Serrano-Rubio,N. Jon Shah,Nameetha Shah,Mazhar Shaikh,B. Uma Shankar,Zeina A. Shboul,Haipeng Shen,Dinggang Shen,Linlin Shen,Haocheng Shen,Varun Shenoy,Feng Shi,Hyung Eun Shin,Hai Shu,Diana M. Sima,Matthew Sinclair,Örjan Smedby,James Snyder,Mohammadreza Soltaninejad,Guidong Song,Mehul Soni,Jean Stawiaski,Shashank Subramanian,Li Sun,Roger Sun,Roger Sun,Jiawei Sun,Kay Sun,Yu Sun,Guoxia Sun,Shuang Sun,Yannick Suter,László Szilágyi,Sanjay N. Talbar,Dacheng Tao,Zhongzhao Teng,Siddhesh Thakur,Meenakshi Thakur,Sameer Tharakan,Pallavi Tiwari,Guillaume Tochon,Tuan Tran,Yuhsiang M. Tsai,Kuan-Lun Tseng,Tran Anh Tuan,Vadim Turlapov,Nicholas J. Tustison,Maria Vakalopoulou,Sergi Valverde,Rami Vanguri,Evgeny Vasiliev,Jonathan Ventura,Luis Vera,Tom Vercauteren,Tom Vercauteren,C. A. Verrastro,Lasitha Vidyaratne,Verónica Vilaplana,Ajeet Vivekanandan,Guotai Wang,Guotai Wang,Qian Wang,Chiatse J. Wang,Weichung Wang,Duo Wang,Ruixuan Wang,Yuanyuan Wang,Chunliang Wang,Ning Wen,Xin Wen,Leon Weninger,Wolfgang Wick,Shaocheng Wu,Qiang Wu,Yihong Wu,Yong Xia,Yanwu Xu,Xiaowen Xu,Peiyuan Xu,Tsai-Ling Yang,Xiaoping Yang,Hao-Yu Yang,Junlin Yang,Haojin Yang,Guang Yang,Hongdou Yao,Xujiong Ye,Changchang Yin,Brett Young-Moxon,Jinhua Yu,Xiangyu Yue,Songtao Zhang,Angela Zhang,Kun Zhang,Xuejie Zhang,Lichi Zhang,Xiaoyue Zhang,Yazhuo Zhang,Lei Zhang,Jianguo Zhang,Xiang Zhang,Tianhao Zhang,Sicheng Zhao,Yu Zhao,Xiaomei Zhao,Liang Zhao,Liang Zhao,Yefeng Zheng,Liming Zhong,Chenhong Zhou,Xiaobing Zhou,Fan Zhou,Hongtu Zhu,Jin Zhu,Ying Zhuge,Weiwei Zong,Jayashree Kalpathy-Cramer,Keyvan Farahani,Christos Davatzikos,Koen Van Leemput,Koen Van Leemput,Bjoern H. Menze +438 more
TL;DR: This study assesses the state-of-the-art machine learning methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e., 2012-2018, and investigates the challenge of identifying the best ML algorithms for each of these tasks.
Journal ArticleDOI
A survey of MRI-based medical image analysis for brain tumor studies
TL;DR: The state of the art in segmentation, registration and modeling related to tumor-bearing brain images with a focus on gliomas is reviewed, giving special attention to recent developments in radiological tumor assessment guidelines.
Journal ArticleDOI
ISLES 2015 - A public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI
Oskar Maier,Bjoern H. Menze,Janina von der Gablentz,Levin Häni,Mattias P. Heinrich,Matthias Liebrand,Stefan Winzeck,Abdul Basit,Paul Bentley,Liang Chen,Daan Christiaens,Francis Dutil,Karl Egger,Chaolu Feng,Ben Glocker,Michael Götz,Tom Haeck,Hanna-Leena Halme,Hanna-Leena Halme,Mohammad Havaei,Khan M. Iftekharuddin,Pierre-Marc Jodoin,Konstantinos Kamnitsas,Elias Kellner,Antti Korvenoja,Hugo Larochelle,Christian Ledig,Jia-Hong Lee,Frederik Maes,Qaiser Mahmood,Qaiser Mahmood,Klaus H. Maier-Hein,Richard McKinley,John Muschelli,Chris Pal,Linmin Pei,Janaki Raman Rangarajan,Syed M. S. Reza,David Robben,Daniel Rueckert,Eero Salli,Paul Suetens,Ching-Wei Wang,Matthias Wilms,Jan S. Kirschke,Ulrike M. Krämer,Thomas F. Münte,Peter Schramm,Roland Wiest,Heinz Handels,Mauricio Reyes +50 more
TL;DR: This paper proposes a common evaluation framework for automatic stroke lesion segmentation from MRIP, describes the publicly available datasets, and presents the results of the two sub‐challenges: Sub‐Acute Stroke Lesion Segmentation (SISS) and Stroke Perfusion Estimation (SPES).