E
Elodie Puybareau
Researcher at École Pour l'Informatique et les Techniques Avancées
Publications - 38
Citations - 2140
Elodie Puybareau is an academic researcher from École Pour l'Informatique et les Techniques Avancées. The author has contributed to research in topics: Segmentation & Computer science. The author has an hindex of 11, co-authored 33 publications receiving 1224 citations. Previous affiliations of Elodie Puybareau include University of Paris & French Institute of Health and Medical Research.
Papers
More filters
Posted ContentDOI
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
Spyridon Bakas,Mauricio Reyes,Andras Jakab,Stefan Bauer,Markus Rempfler,Alessandro Crimi,Russell T. Shinohara,Christoph Berger,Sung Min Ha,Martin Rozycki,Marcel Prastawa,Esther Alberts,Jana Lipkova,John Freymann,John Freymann,Justin Kirby,Justin Kirby,Michel Bilello,Hassan M. Fathallah-Shaykh,Roland Wiest,Jan S. Kirschke,Benedikt Wiestler,Rivka R. Colen,Aikaterini Kotrotsou,Pamela LaMontagne,Daniel S. Marcus,Mikhail Milchenko,Arash Nazeri,Marc-André Weber,Abhishek Mahajan,Ujjwal Baid,Elizabeth R. Gerstner,Dongjin Kwon,Gagan Acharya,Manu Agarwal,M. S. Alam,Alberto Albiol,Antonio Albiol,F. Albiol,Varghese Alex,Nigel M. Allinson,Pedro H. A. Amorim,Abhijit Amrutkar,Ganesh Anand,Simon Andermatt,Tal Arbel,Pablo Arbeláez,Aaron Avery,Muneeza Azmat,B. Pranjal,Wenjia Bai,Subhashis Banerjee,Subhashis Banerjee,Bill Barth,Thomas Batchelder,Kayhan Batmanghelich,Enzo Battistella,Enzo Battistella,Andrew Beers,Mikhail Belyaev,Martin Bendszus,Eze Benson,Jose Bernal,H. N. Bharath,George Biros,Sotirios Bisdas,James M. Brown,Mariano Cabezas,Shilei Cao,Jorge Cardoso,Eric Carver,Adrià Casamitjana,Laura Silvana Castillo,Marcel Catà,Philippe C. Cattin,Albert Cerigues,Vinicius S. Chagas,Siddhartha Chandra,Yi-Ju Chang,Shiyu Chang,Ken Chang,Joseph Chazalon,Shengcong Chen,Wei Chen,Jefferson W. Chen,Zhaolin Chen,Kun Cheng,Ahana Roy Choudhury,Roger Chylla,Albert Clèrigues,Steven Colleman,Ramiro German Rodriguez Colmeiro,Ramiro German Rodriguez Colmeiro,Marc Combalia,Anthony Costa,Xiaomeng Cui,Zhenzhen Dai,Lutao Dai,Laura Alexandra Daza,Eric Deutsch,Changxing Ding,Chao Dong,Shidu Dong,Wojciech Dudzik,Zach Eaton-Rosen,Gary F. Egan,Guilherme Escudero,Théo Estienne,Théo Estienne,Richard M. Everson,Jonathan Fabrizio,Yong Fan,Longwei Fang,Xue Feng,Enzo Ferrante,Lucas Fidon,Martin H. Fischer,Andrew P. French,Naomi Fridman,Huan Fu,David Fuentes,Yaozong Gao,Evan Gates,David T. Gering,Amir Gholami,Willi Gierke,Ben Glocker,Mingming Gong,Mingming Gong,Sandra González-Villà,Thomas Grosges,Yuanfang Guan,Sheng Guo,Sudeep Gupta,Woo-Sup Han,Il Song Han,Konstantin Harmuth,Huiguang He,Aura Hernández-Sabaté,Evelyn Herrmann,Naveen Himthani,Winston H. Hsu,Cheyu Hsu,Hu Xiaojun,Xiaobin Hu,Yan Hu,Yifan Hu,Rui Hua,Teng-Yi Huang,Weilin Huang,Sabine Van Huffel,Quan Huo,Vivek Hv,Khan M. Iftekharuddin,Fabian Isensee,Mobarakol Islam,Aaron S. Jackson,Sachin Jambawalikar,Andrew Jesson,Weijian Jian,Peter H. Jin,V Jeya Maria Jose,V Jeya Maria Jose,Alain Jungo,Bernhard Kainz,Konstantinos Kamnitsas,Po-Yu Kao,Ayush Karnawat,Thomas Kellermeier,Adel Kermi,Kurt Keutzer,Mohamed Tarek Khadir,Mahendra Khened,Philipp Kickingereder,Geena Kim,Nik King,Haley Knapp,Urspeter Knecht,Lisa Kohli,Deren Kong,Xiangmao Kong,Simon Koppers,Avinash Kori,Ganapathy Krishnamurthi,Egor Krivov,Piyush Kumar,Kaisar Kushibar,Dmitrii Lachinov,Dmitrii Lachinov,Tryphon Lambrou,Joon Lee,Chengen Lee,Yuehchou Lee,Matthew C. H. Lee,Szidónia Lefkovits,László Lefkovits,James Levitt,Tengfei Li,Hongwei Li,Wenqi Li,Wenqi Li,Hongyang Li,Xiaochuan Li,Yuexiang Li,Heng Li,Zhenye Li,Xiaoyu Li,Zeju Li,XiaoGang Li,Zheng-Shen Lin,Fengming Lin,Pietro Liò,C Liu,Boqiang Liu,Xiang Liu,Mingyuan Liu,Ju Liu,Luyan Liu,Xavier Lladó,Marc Moreno Lopez,Pablo Ribalta Lorenzo,Zhentai Lu,Lin Luo,Zhigang Luo,Jun Ma,Kai Ma,Thomas Mackie,Anant Madabushi,Issam Mahmoudi,Klaus H. Maier-Hein,Pradipta Maji,C. P. Mammen,Andreas Mang,B.S. Manjunath,M. Marcinkiewicz,Steven McDonagh,Stephen J. McKenna,Richard McKinley,Miriam Mehl,Sachin Mehta,Raghav Mehta,Raphael Meier,Christoph Meinel,Dorit Merhof,Craig H. Meyer,Robert F. Miller,Sushmita Mitra,Aliasgar Moiyadi,David Molina-García,Miguel Monteiro,Grzegorz Mrukwa,Andriy Myronenko,Jakub Nalepa,Thuyen Ngo,Dong Nie,Holly Ning,Chen Niu,Nicholas Nuechterlein,Eric K. Oermann,Arlindo L. Oliveira,Arlindo L. Oliveira,Diego D. C. Oliveira,Arnau Oliver,Alexander F. I. Osman,Yu-Nian Ou,Sebastien Ourselin,Nikos Paragios,Moo Sung Park,Brad Paschke,J. Gregory Pauloski,Kamlesh Pawar,Nick Pawlowski,Linmin Pei,Suting Peng,Silvio M. Pereira,Julián Pérez-Beteta,Víctor M. Pérez-García,Simon Pezold,Bao Pham,Ashish Phophalia,Gemma Piella,G. N. Pillai,Marie Piraud,Maxim Pisov,Anmol Popli,Michael P. Pound,Reza Pourreza,Prateek Prasanna,Vesna Prkovska,Tony P. Pridmore,Santi Puch,Elodie Puybareau,Buyue Qian,Xu Qiao,Martin Rajchl,Swapnil Rane,Michael Rebsamen,Hongliang Ren,Xuhua Ren,Karthik Revanuru,Mina Rezaei,Oliver Rippel,Luis Carlos Rivera,Charlotte Robert,Bruce R. Rosen,Daniel Rueckert,Mohammed Safwan,Mostafa Salem,Joaquim Salvi,Irina Sánchez,Heitor M. Santos,Emmett Sartor,Dawid Schellingerhout,Klaudius Scheufele,Matthew R. Scott,Artur A. Scussel,Sara Sedlar,Juan Pablo Serrano-Rubio,N. Jon Shah,Nameetha Shah,Mazhar Shaikh,B. Uma Shankar,Zeina A. Shboul,Haipeng Shen,Dinggang Shen,Linlin Shen,Haocheng Shen,Varun Shenoy,Feng Shi,Hyung Eun Shin,Hai Shu,Diana M. Sima,Matthew Sinclair,Örjan Smedby,James Snyder,Mohammadreza Soltaninejad,Guidong Song,Mehul Soni,Jean Stawiaski,Shashank Subramanian,Li Sun,Roger Sun,Roger Sun,Jiawei Sun,Kay Sun,Yu Sun,Guoxia Sun,Shuang Sun,Yannick Suter,László Szilágyi,Sanjay N. Talbar,Dacheng Tao,Zhongzhao Teng,Siddhesh Thakur,Meenakshi Thakur,Sameer Tharakan,Pallavi Tiwari,Guillaume Tochon,Tuan Tran,Yuhsiang M. Tsai,Kuan-Lun Tseng,Tran Anh Tuan,Vadim Turlapov,Nicholas J. Tustison,Maria Vakalopoulou,Sergi Valverde,Rami Vanguri,Evgeny Vasiliev,Jonathan Ventura,Luis Vera,Tom Vercauteren,Tom Vercauteren,C. A. Verrastro,Lasitha Vidyaratne,Verónica Vilaplana,Ajeet Vivekanandan,Guotai Wang,Guotai Wang,Qian Wang,Chiatse J. Wang,Weichung Wang,Duo Wang,Ruixuan Wang,Yuanyuan Wang,Chunliang Wang,Ning Wen,Xin Wen,Leon Weninger,Wolfgang Wick,Shaocheng Wu,Qiang Wu,Yihong Wu,Yong Xia,Yanwu Xu,Xiaowen Xu,Peiyuan Xu,Tsai-Ling Yang,Xiaoping Yang,Hao-Yu Yang,Junlin Yang,Haojin Yang,Guang Yang,Hongdou Yao,Xujiong Ye,Changchang Yin,Brett Young-Moxon,Jinhua Yu,Xiangyu Yue,Songtao Zhang,Angela Zhang,Kun Zhang,Xuejie Zhang,Lichi Zhang,Xiaoyue Zhang,Yazhuo Zhang,Lei Zhang,Jianguo Zhang,Xiang Zhang,Tianhao Zhang,Sicheng Zhao,Yu Zhao,Xiaomei Zhao,Liang Zhao,Liang Zhao,Yefeng Zheng,Liming Zhong,Chenhong Zhou,Xiaobing Zhou,Fan Zhou,Hongtu Zhu,Jin Zhu,Ying Zhuge,Weiwei Zong,Jayashree Kalpathy-Cramer,Keyvan Farahani,Christos Davatzikos,Koen Van Leemput,Koen Van Leemput,Bjoern H. Menze +438 more
TL;DR: This study assesses the state-of-the-art machine learning methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e., 2012-2018, and investigates the challenge of identifying the best ML algorithms for each of these tasks.
Journal ArticleDOI
Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge
Hugo J. Kuijf,Adrià Casamitjana,D. Louis Collins,Mahsa Dadar,Achilleas Georgiou,Mohsen Ghafoorian,Dakai Jin,April Khademi,Jesse Knight,Hongwei Li,Xavier Lladó,J. Matthijs Biesbroek,Miguel Luna,Qaiser Mahmood,Richard McKinley,Alireza Mehrtash,Sebastien Ourselin,Bo-yong Park,Hyunjin Park,Sang-Hyun Park,Simon Pezold,Elodie Puybareau,Jeroen de Bresser,Leticia Rittner,Carole H. Sudre,Sergi Valverde,Verónica Vilaplana,Roland Wiest,Yongchao Xu,Ziyue Xu,Guodong Zeng,Jianguo Zhang,Guoyan Zheng,Rutger Heinen,Christopher Chen,Wiesje M. van der Flier,Frederik Barkhof,Max A. Viergever,Geert Jan Biessels,Simon Andermatt,Mariana P. Bento,Matt Berseth,Mikhail Belyaev,M. Jorge Cardoso +43 more
TL;DR: There is a cluster of four methods that rank significantly better than the other methods, with one clear winner, and the inter-scanner robustness ranking shows that not all the methods generalize to unseen scanners.
Journal ArticleDOI
Benchmark on Automatic Six-Month-Old Infant Brain Segmentation Algorithms: The iSeg-2017 Challenge
Li Wang,Dong Nie,Guannan Li,Elodie Puybareau,Jose Dolz,Qian Zhang,Fan Wang,Jing Xia,Zhengwang Wu,Jia-Wei Chen,Kim-Han Thung,Toan Duc Bui,Jitae Shin,Guodong Zeng,Guoyan Zheng,Vladimir S. Fonov,Andrew Doyle,Yongchao Xu,Pim Moeskops,Josien P. W. Pluim,Christian Desrosiers,Ismail Ben Ayed,Gerard Sanroma,Oualid Benkarim,Adrià Casamitjana,Verónica Vilaplana,Weili Lin,Gang Li,Dinggang Shen +28 more
TL;DR: The iSeg-2017 challenge provides a set of six-month infant subjects with manual labels for training and testing the participating methods, and among the 21 automatic segmentation methods participating, the eight top-ranked teams are reviewed, in terms of Dice ratio, modified Hausdorff distance, and average surface distance.
Journal ArticleDOI
Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge
Hugo J. Kuijf,J. Matthijs Biesbroek,Jeroen de Bresser,Rutger Heinen,Simon Andermatt,Mariana P. Bento,Matt Berseth,Mikhail Belyaev,M. Jorge Cardoso,Adrià Casamitjana,D. Louis Collins,Mahsa Dadar,Achilleas Georgiou,Mohsen Ghafoorian,Dakai Jin,April Khademi,Jesse Knight,Hongwei Li,Xavier Lladó,Miguel Luna,Qaiser Mahmood,Richard McKinley,Alireza Mehrtash,Sebastien Ourselin,Bo-yong Park,Hyunjin Park,Sang-Hyun Park,Simon Pezold,Elodie Puybareau,Leticia Rittner,Carole H. Sudre,Sergi Valverde,Verónica Vilaplana,Roland Wiest,Yongchao Xu,Ziyue Xu,Guodong Zeng,Jianguo Zhang,Guoyan Zheng,Christopher Chen,Wiesje M. van der Flier,Frederik Barkhof,Max A. Viergever,Geert Jan Biessels +43 more
TL;DR: The WMH segmentation challenge as discussed by the authors was the first attempt to evaluate the performance of automatic segmentation of cerebral white matter hyperintensities (WMH) of presumed vascular origin.
Journal ArticleDOI
A global benchmark of algorithms for segmenting the left atrium from late gadolinium-enhanced cardiac magnetic resonance imaging.
Zhaohan Xiong,Qing Xia,Zhiqiang Hu,Ning Huang,Cheng Bian,Yefeng Zheng,Sulaiman Vesal,Nishant Ravikumar,Andreas Maier,Xin Yang,Pheng-Ann Heng,Dong Ni,Caizi Li,Qianqian Tong,Weixin Si,Elodie Puybareau,Younes Khoudli,Thierry Géraud,Chen Chen,Wenjia Bai,Daniel Rueckert,Lingchao Xu,Xiahai Zhuang,Xinzhe Luo,Shuman Jia,Maxime Sermesant,Yashu Liu,Kuanquan Wang,Davide Borra,Alessandro Masci,Cristiana Corsi,Coen de Vente,Mitko Veta,Rashed Karim,Chandrakanth Jayachandran Preetha,Sandy Engelhardt,Menyun Qiao,Yuanyuan Wang,Qian Tao,Marta Nuñez-Garcia,Oscar Camara,Nicoló Savioli,Pablo Lamata,Jichao Zhao +43 more
TL;DR: This large-scale benchmarking study makes a significant step towards much-improved segmentation methods for atrial LGE-MRIs, and will serve as an important benchmark for evaluating and comparing the future works in the field.